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Add option to edit help text #334

Add option to edit help text

Add option to edit help text #334

name: Docker build test publish
on:
pull_request:
branches: [ master ]
jobs:
build:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- name: Install docker and pre-reqs
shell: bash -l {0}
run: |
sudo apt-get update -y
sudo apt-get upgrade -y
sudo apt-get install ca-certificates curl gnupg lsb-release -y
sudo mkdir -p /etc/apt/keyrings
curl -fsSL https://download.docker.com/linux/ubuntu/gpg | sudo gpg --dearmor -o /etc/apt/keyrings/docker.gpg
echo \
"deb [arch=$(dpkg --print-architecture) signed-by=/etc/apt/keyrings/docker.gpg] https://download.docker.com/linux/ubuntu \
$(lsb_release -cs) stable" | sudo tee /etc/apt/sources.list.d/docker.list > /dev/null
sudo apt-get update
sudo apt-get install docker-ce docker-ce-cli containerd.io docker-compose-plugin
sudo docker run hello-world
- name: Build docker container
shell: bash -l {0}
run: |
docker build -t cil-viewer docker/web-app
- name: Run docker container with tests
shell: bash -l {0}
run: |
docker run --rm --entrypoint /bin/bash -v /home/runner/work/CILViewer/CILViewer:/root/source_code cil-viewer -c "source ./mambaforge/etc/profile.d/conda.sh && conda activate cilviewer_webapp && conda install cil-data pytest -c ccpi && python -m pytest /root/source_code/Wrappers/Python -k 'not test_version and not test_cli_resample and not test_CILViewerBase and not test_CILViewer3D and not test_viewer_main_windows and not test_ui_dialogs'"
# TODO: publish to come later