add bib and csl file to vignettes, fix man/depricated.Rd name #123

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Job	Run time
macOS-latest (release)	4m 46s
windows-latest (release)	5m 41s
ubuntu-latest (devel)	18m 14s
ubuntu-latest (release)	6m 29s
ubuntu-latest (oldrel-1)	5m 47s
	40m 57s