Change #3 #3

	name: Run Simple R Script on HPC via Slurm

	on:
	push:
	branches:
	- feature/ci-cd-pipeline

	jobs:
	test-hpc:
	runs-on: ubuntu-latest

	steps:
	- name: Checkout Repository
	uses: actions/checkout@v3

	- name: Set Up SSH Access
	run: \|
	mkdir -p ~/.ssh
	echo "${{ secrets.SSH_PRIVATE_KEY }}" > ~/.ssh/id_rsa
	chmod 600 ~/.ssh/id_rsa
	ssh-keyscan -H login-00.discovery.neu.edu >> ~/.ssh/known_hosts

	- name: Transfer Files to HPC
	run: \|
	scp benchmark.R config.slurm raina.ans@login-00.discovery.neu.edu:/home/raina.ans/R

	- name: Submit Slurm Job
	run: \|
	ssh raina.ans@login-00.discovery.neu.edu "cd R && sbatch config.slurm"

	- name: Monitor Slurm Job
	run: \|
	ssh raina.ans@login-00.discovery.neu.edu "
	while squeue -u raina.ans \| grep -q 'R-test-job'; do
	echo 'Job is still running...'
	sleep 10
	done
	"

	- name: Fetch Output
	run: \|
	scp raina.ans@login-00.discovery.neu.edu:R/job_output.txt job_output.txt

	- name: Upload Output as Artifact
	uses: actions/upload-artifact@v3
	with:
	name: benchmark-output
	path: job_output.txt

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