Added changes for slurm job #5

Vitek-Lab · Nov 5, 2024 · 58386d4 · 58386d4
1 parent 2a0539d
commit 58386d4
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/benchmark/config.slurm b/benchmark/config.slurm
@@ -16,7 +16,7 @@ export LC_ALL=C
 export R_LIBS_USER=/home/raina.ans/R/x86_64-pc-linux-gnu-library/4.2
 
 module load R
-Rscript -e "if (!requireNamespace('BiocManager', quietly = TRUE)) install.packages('BiocManager', lib = Sys.getenv('R_LIBS_USER'), repos = 'https://cloud.r-project.org'); \
+Rscript -e "if (!requireNamespace('BiocManager', quietly = TRUE)) install.packages('BiocManager', lib = Sys.getenv('R_LIBS_USER'), repos = 'https://cloud.r-project.org', version = '3.16', force = TRUE); \
 BiocManager::install('MSstats', lib = Sys.getenv('R_LIBS_USER'), update = FALSE); \
 BiocManager::install('MSstatsConvert', lib = Sys.getenv('R_LIBS_USER'), update = FALSE); \
 install.packages(c('dplyr', 'stringr', 'ggplot2'), lib = Sys.getenv('R_LIBS_USER'), repos = 'https://cloud.r-project.org')"