Added changes for R script

Vitek-Lab · Nov 5, 2024 · 8e57590 · 8e57590
1 parent 4f00a86
commit 8e57590
Showing 1 changed file with 6 additions and 1 deletion.
diff --git a/benchmark/config.slurm b/benchmark/config.slurm
@@ -10,13 +10,18 @@
 
 module load R-geospatial
 
+
+module load gcc/11.1.0
+module load cmake/3.23.2
+
 export LC_ALL=C
 export R_LIBS_USER=/home/raina.ans/R/x86_64-pc-linux-gnu-library/4.2-geospatial
 
+
 mkdir -p $R_LIBS_USER
 
 module load R/4.4.0
-Rscript -e "if (!requireNamespace('BiocManager', quietly = TRUE)) install.packages('BiocManager', lib = Sys.getenv('R_LIBS_USER'), repos = 'https://cloud.r-project.org', version = '3.16', force = TRUE); \
+Rscript -e "if (!requireNamespace('BiocManager', quietly = TRUE)) install.packages('BiocManager', lib = Sys.getenv('R_LIBS_USER'), repos = 'https://cloud.r-project.org'); \
 BiocManager::install('MSstats', lib = Sys.getenv('R_LIBS_USER'), update = FALSE); \
 BiocManager::install('MSstatsConvert', lib = Sys.getenv('R_LIBS_USER'), update = FALSE); \
 install.packages(c('dplyr', 'stringr', 'ggplot2'), lib = Sys.getenv('R_LIBS_USER'), repos = 'https://cloud.r-project.org')"