fixed unit tests, adjusted codium secret

Vitek-Lab · Oct 31, 2024 · 1d22c21 · 1d22c21
1 parent 2ad3653
commit 1d22c21
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/.github/workflows/codium-pr-agent.yml b/.github/workflows/codium-pr-agent.yml
@@ -14,5 +14,5 @@ jobs:
         id: pragent
         uses: Codium-ai/pr-agent@main
         env:
-          OPENAI_KEY: ${{ secrets.OPENAI_KEY }}
+          OPENAI_KEY: ${{ secrets.MSSTATS_OPENAI_KEY }}
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
diff --git a/tests/testthat/test-getSubnetworkFromIndra.R b/tests/testthat/test-getSubnetworkFromIndra.R
@@ -7,7 +7,7 @@ test_that("getSubnetworkFromIndra works correctly", {
     })
     suppressWarnings(subnetwork <- getSubnetworkFromIndra(input))
     expect_equal(nrow(subnetwork$nodes), 7)
-    expect_equal(nrow(subnetwork$edges), 2)
+    expect_equal(nrow(subnetwork$edges), 1)
 })
 
 test_that("getSubnetworkFromIndra with pvalue filter works correctly", {
@@ -21,5 +21,5 @@ test_that("getSubnetworkFromIndra with pvalue filter works correctly", {
         subnetwork <- getSubnetworkFromIndra(input, pvalueCutoff = 0.45)
     )
     expect_equal(nrow(subnetwork$nodes), 6)
-    expect_equal(nrow(subnetwork$edges), 2)
+    expect_equal(nrow(subnetwork$edges), 1)
 })