Update Ig (#1)

Small fixes and updates to IG
WorldHealthOrganization · May 31, 2024 · 8c207d2 · 8c207d2
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diff --git a/.github/workflows/build.yml → .github/workflows/deploy.yml b/.github/workflows/build.yml → .github/workflows/deploy.yml
@@ -40,5 +40,4 @@ jobs:
         uses: peaceiris/actions-gh-pages@v3
         with:
           github_token: ${{ secrets.GITHUB_TOKEN }}
-          publish_dir: ./output
-
+          publish_dir: ./output
diff --git a/README.md b/README.md
@@ -1,9 +1,5 @@
 <!--badges-->
-[![License: CC BY-IGO 3.0](https://licensebuttons.net/l/by-nc/3.0/igo/80x15.png)](https://creativecommons.org/licenses/by/3.0/igo)
-![CI Build](https://img.shields.io/github/actions/workflow/status/I-TECH-UW/smart-hiv/ghbuild.yml)  
-![QA errors](https://img.shields.io/badge/dynamic/json?url=https%3A%2F%2FI-TECH-UW.github.io%2Fsmart-hiv%2Fqa.json&query=%24.errs&logoColor=red&label=QA%20errors&color=yellow)
-![QA warnings](https://img.shields.io/badge/dynamic/json?url=https%3A%2F%2FI-TECH-UW.github.io%2Fsmart-hiv%2Fqa.json&query=%24.warnings&logoColor=orange&label=QA%20warnings&color=yellow)
-![QA hints](https://img.shields.io/badge/dynamic/json?url=https%3A%2F%2FI-TECH-UW.github.io%2Fsmart-hiv%2Fqa.json&query=%24.hints&logoColor=yellow&label=QA%20hints&color=yellow)
+![Deploy IG](https://github.com/WorldHealthOrganization/smart-hiv/actions/workflows/deploy.yml/badge.svg)](https://github.com/WorldHealthOrganization/smart-hiv/actions/workflows/deploy.yml)  
 <!--/badges-->   
 
 # WHO SMART GUIDELINES - HIV Implementation Guide

diff --git a/input/anc-cds.xml b/input/anc-cds.xml
@@ -1,7 +1,7 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <ImplementationGuide xmlns="http://hl7.org/fhir">
   <id value="who.fhir.anc-cds"/>
-  <url value="http://fhir.org/guides/who/anc-cds/ImplementationGuide/who.fhir.anc-cds"/>
+  <url value="http://fhir.org/guides/who/hiv-dak/ImplementationGuide/who.fhir.anc-cds"/>
   <version value="0.3.0"/>
   <name value="ANCCDS"/>
   <title value="SMART WHO HIV Implmementation Guide"/>

diff --git a/input/cql/AllConcepts.cql b/input/cql/AllConcepts.cql
diff --git a/input/cql/nullContactDataElements.cql → input/cql/AllContactDataElements.cql b/input/cql/nullContactDataElements.cql → input/cql/AllContactDataElements.cql
@@ -1,12 +1,12 @@
-library nullContactDataElements
+library AllContactDataElements
 
 using FHIR version '4.0.1'
 
 include FHIRHelpers version '4.0.1'
-include FHIRCommon version '1.1.000' called FC
+include FHIRCommon version '4.0.1' called FC
 
 include WHOCommon called WC
-include nullConcepts called Cs
+include AllConcepts version '0.0.1' called Cx
 
 context Encounter
 

diff --git a/input/cql/HIVB2DT.cql b/input/cql/HIVB2DT.cql
@@ -11,7 +11,7 @@ library HIVB2DT
  using FHIR version '4.0.1'
 
 
- include HIVIndicatorCommon version '0.01' called HIC
+ include HIVIndicatorCommon version '0.0.1' called HIC
  include FHIRHelpers version '4.0.1'
  include WHOCommon called WCom
  include FHIRCommon called FC

diff --git a/input/cql/HIVB7DT.cql b/input/cql/HIVB7DT.cql
@@ -8,19 +8,19 @@ library HIVB7DT
 
 using FHIR version '4.0.1'
 
-//codesystem "Custom_Codes": 'http://fhir.org/guides/itech-uw/who-smart-hiv-dak/CodeSystem/concept-codes'
-codesystem "HIV_DAK_Codes": 'http://fhir.org/guides/itech-uw/who-smart-hiv-dak/CodeSystem/concept-codes'
-//valueset "TestresultofHIVassay1Codes": 'http://fhir.org/guides/itech-uw/ValueSet/hiv-b-de95'
-valueset "Assay 1 reactive": 'http://fhir.org/guides/itech-uw/ValueSet/hiv-b-de95'
-valueset "Assay 1": 'http://fhir.org/guides/itech-uw/ValueSet/hiv-b-de90'
-valueset "Assay 2": 'http://fhir.org/guides/itech-uw/ValueSet/hiv-b-de91'
-valueset "Assay 2 reactive": 'http://fhir.org/guides/itech-uw/ValueSet/hiv-e-de205'
-valueset "Assay 2 non-reactive": 'http://fhir.org/guides/itech-uw/ValueSet/hiv-e-de206'
-valueset "Assay 3": 'http://fhir.org/guides/itech-uw/ValueSet/hiv-b-de92'
-valueset "Assay 1 repeated": 'http://fhir.org/guides/itech-uw/ValueSet/hiv-b-de93'
-valueset "HIVtesttypeCodes": 'http://fhir.org/guides/itech-uw/ValueSet/hiv-b-de82'
-valueset "Reactive": 'http://fhir.org/guides/itech-uw/ValueSet/hiv-b-de103'
-valueset "Non-reactive": 'http://fhir.org/guides/itech-uw/ValueSet/hiv-b-de104'
+//codesystem "Custom_Codes": 'http://fhir.org/guides/who/hiv-dak/CodeSystem/HIV-DAKConcepts'
+codesystem "HIV_DAK_Codes": 'http://fhir.org/guides/who/hiv-dak/CodeSystem/HIV-DAKConcepts'
+//valueset "TestresultofHIVassay1Codes": 'http://fhir.org/guides/who/hiv-dak/ValueSet/hiv-b-de95'
+valueset "Assay 1 reactive": 'http://fhir.org/guides/who/hiv-dak/ValueSet/hiv-b-de95'
+valueset "Assay 1": 'http://fhir.org/guides/who/hiv-dak/ValueSet/hiv-b-de90'
+valueset "Assay 2": 'http://fhir.org/guides/who/hiv-dak/ValueSet/hiv-b-de91'
+valueset "Assay 2 reactive": 'http://fhir.org/guides/who/hiv-dak/ValueSet/hiv-e-de205'
+valueset "Assay 2 non-reactive": 'http://fhir.org/guides/who/hiv-dak/ValueSet/hiv-e-de206'
+valueset "Assay 3": 'http://fhir.org/guides/who/hiv-dak/ValueSet/hiv-b-de92'
+valueset "Assay 1 repeated": 'http://fhir.org/guides/who/hiv-dak/ValueSet/hiv-b-de93'
+valueset "HIVtesttypeCodes": 'http://fhir.org/guides/who/hiv-dak/ValueSet/hiv-b-de82'
+valueset "Reactive": 'http://fhir.org/guides/who/hiv-dak/ValueSet/hiv-b-de103'
+valueset "Non-reactive": 'http://fhir.org/guides/who/hiv-dak/ValueSet/hiv-b-de104'
 
 include FHIRHelpers version '4.0.1'
 include WHOCommon called WCom

diff --git a/input/cql/HIVIND18.cql b/input/cql/HIVIND18.cql
@@ -26,7 +26,7 @@ library HIVIND18
 using FHIR version '4.0.1'
 
 
-include HIVIndicatorCommon version '0.01' called HIC
+include HIVIndicatorCommon version '0.0.1' called HIC
 include FHIRHelpers version '4.0.1'
 include WHOCommon called WCom
 include FHIRCommon called FC

diff --git a/input/cql/HIVIND19.cql b/input/cql/HIVIND19.cql
@@ -27,7 +27,7 @@ library HIVIND19
 using FHIR version '4.0.1'
 
 
-include HIVIndicatorCommon version '0.01' called HIC
+include HIVIndicatorCommon version '0.0.1' called HIC
 include FHIRHelpers version '4.0.1'
 include WHOCommon called WCom
 include FHIRCommon called FC

diff --git a/input/cql/HIVIND20.cql b/input/cql/HIVIND20.cql
@@ -25,7 +25,7 @@ library HIVIND20
 using FHIR version '4.0.1'
 
 
-include HIVIndicatorCommon version '0.01' called HIC
+include HIVIndicatorCommon version '0.0.1' called HIC
 include FHIRHelpers version '4.0.1'
 include WHOCommon called WCom
 include FHIRCommon called FC

diff --git a/input/cql/HIVIND27.cql b/input/cql/HIVIND27.cql
@@ -42,7 +42,7 @@ library HIVIND27
 using FHIR version '4.0.1'
 
 
-include HIVIndicatorCommon version '0.01' called HIC
+include HIVIndicatorCommon version '0.0.1' called HIC
 include FHIRHelpers version '4.0.1'
 include WHOCommon called WCom
 include FHIRCommon called FC

diff --git a/input/cql/HIVIND28.cql b/input/cql/HIVIND28.cql
@@ -44,7 +44,7 @@ library HIVIND28
 using FHIR version '4.0.1'
 
 
-include HIVIndicatorCommon version '0.01' called HIC
+include HIVIndicatorCommon version '0.0.1' called HIC
 include FHIRHelpers version '4.0.1'
 include WHOCommon called WCom
 include FHIRCommon called FC

diff --git a/input/cql/HIVIND30.cql b/input/cql/HIVIND30.cql
@@ -35,7 +35,7 @@ library HIVIND30
 using FHIR version '4.0.1'
 
 
-include HIVIndicatorCommon version '0.01' called HIC
+include HIVIndicatorCommon version '0.0.1' called HIC
 include FHIRHelpers version '4.0.1'
 include WHOCommon called WCom
 include FHIRCommon called FC

diff --git a/input/cql/HIVIndicatorCommon.cql b/input/cql/HIVIndicatorCommon.cql
@@ -1,17 +1,17 @@
-library HIVIndicatorCommon version '0.01' 
+library HIVIndicatorCommon version '0.0.1' 
 
 using FHIR version '4.0.1'
 
 
 codesystem "ObservationValue": 'http://terminology.hl7.org/CodeSystem/observation-value'
-codesystem "HIV_DAK_Codes": 'http://fhir.org/guides/itech-uw/who-smart-hiv-dak/CodeSystem/concept-codes'
+codesystem "HIV_DAK_Codes": 'http://fhir.org/guides/who/hiv-dak/CodeSystem/HIV-DAKConcepts'
 codesystem "ConditionClinicalStatusCodes": 'http://terminology.hl7.org/CodeSystem/condition-clinical'
 codesystem "ConditionCategoryCodes": 'http://terminology.hl7.org/CodeSystem/condition-category'
 codesystem "ObservationStatusCodes": 'http://hl7.org/fhir/observation-status'
 
-codesystem "Keypopulationmembertype*Codes": 'http://fhir.org/guides/itech-uw/ValueSet/hiv-b-de51'
-codesystem "HIVstatusCodes": 'http://fhir.org/guides/itech-uw/ValueSet/hiv-b-de116'
-codesystem "HIVtreatmentoutcomeCodes": 'http://fhir.org/guides/itech-uw/ValueSet/hiv-h-de42'
+codesystem "Keypopulationmembertype*Codes": 'http://fhir.org/guides/who/hiv-dak/ValueSet/hiv-b-de51'
+codesystem "HIVstatusCodes": 'http://fhir.org/guides/who/hiv-dak/ValueSet/hiv-b-de116'
+codesystem "HIVtreatmentoutcomeCodes": 'http://fhir.org/guides/who/hiv-dak/ValueSet/hiv-h-de42'
 codesystem "ObservationCategoryCodes": 'http://terminology.hl7.org/CodeSystem/observation-category'
 
 include FHIRHelpers version '4.0.1'
@@ -36,7 +36,7 @@ codesystem ARTCodes: 'http://example.org/fhir/CodeSystem/art-codes'
 valueset "On ART": 'http://example.org/fhir/ValueSet/on-art'
 valueset "encounter-diagnosis": 'http://example.org/fhir/ValueSet/encounter-diagnosis'
 valueset "social-history": 'http://example.org/fhir/ValueSet/social-history'
-valueset "HIVtesttypeCodes": 'http://fhir.org/guides/itech-uw/ValueSet/hiv-b-de82'
+valueset "HIVtesttypeCodes": 'http://fhir.org/guides/who/hiv-dak/ValueSet/hiv-b-de82'
 valueset "Community-level testing" : 'http://example.org/fhir/ValueSet/HIV.B.DE16'
 valueset "Facility-level testing" : 'http://example.org/fhir/ValueSet/HIV.B.DE17'
 valueset "ANC contact during pregnancy" : 'http://example.org/fhir/ValueSet/HIV.E.DE39'