The microbial biodiversity at the archeological site of Tel Megiddo (Israel)

The data and code used to analyze the microbiome diversity and thier community dynamics at Tel Megiddo (Israel) are shown here.

Code file

• TelM_MS_analysis.r
  The main code used to analyze microbiome samples collected from Tel Megiddo.
• packages.r
  The R packages needed in analysis code.

Data folder

• Metadata_Monumentome_2022-04-25.csv:
  Metadata and geographical information for ancient microbiome samples.
• monument_taxonomic_level-Adjust_final.csv:
  The taxonomical level annotation for microbiome found in samples
• monumentome_read_abundance.csv:
  The read abundance for microbiome in samples- Column 1: Sample ID
  -TelMegiddo - sampling_final.xlsx:
  Sampling location description of Tel Megiddo.
  -Metasub/MetaSub_taxa_city_proportion.csv Metasub microbiome data which is used to do the comparsion with microbe in Tel Megiddo.