data for running scripts used during lecture
- "Unix is like a chainsaw":
rm
example - how to monitor / pause / kill a process, redirect output: mrbayes example
- partitionfinder: example for
here,
one-liner with
grep
- combined.nex: primate sequence data, nexus format, original from
Perelman et al. 2011
with outgroups removed. example for
here,
one-liner with
cut
to extract one column of data - table of SNPs: example for
here,
one-liner with
sed
- remove species with missing sequences: example for awk, for instance