Juicer 1.5.6

• Biggest change is that information describing how this file was produced is now printed in the top of the inter.txt file and added to the .hic file as usual.
• Adding in new flags -b ligation and -t threads
• Changed juicer_arrowhead, juicer_hiccups, and juicer_postprocessing to not fail immediately when bed files not found
• Corrected scripts so bc is not required
• Proper unzipping logic in SLURM and UGER
• Will always split if chunk size sent in
• Bug fixes in terms of looking for endings in splits directory
• Exits changed to 1
• Debugging changed to better determine exactly where script failed
• Touch files added to deal with jobs killed by the cluster
• Warning for genomePath
• Header added to hic file containing all the information about versions of software used to create that file
• Fixed bug in CPU version where multiple fastqs were not processed
• Some other bug fixes in SLURM and CPU