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  1. coseq coseq Public

    Co-Expression Analysis of Sequencing Data

    R 6 2

  2. HTSFilter HTSFilter Public

    Filter replicated high-throughput transcriptome sequencing data

    R

  3. EDGE-in-TCGA EDGE-in-TCGA Public

    Source code to reproduce results from "Exploring Drivers of Gene Expression in The Cancer Genome Atlas" by Rau et al. (2017)

    R 9 5

  4. rosetta rosetta Public

    Regeneration Rosetta: An interactive R/Shiny app to explore regeneration-associated gene expression and chromatin accessibility

    R 2

  5. maskmeans maskmeans Public

    Multi-view agglomeration/splitting K-means clustering algorithm

    R 3 1

  6. padma padma Public

    Pathway deviation scores using multiple factor analysis

    R 3 1