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@arq5x
arq5x committed Apr 28, 2023
1 parent dc0c6c2 commit 3a4832e
Showing 1 changed file with 60 additions and 60 deletions.
120 changes: 60 additions & 60 deletions src/utils/BamTools/include/BamAlignment.mapping.hpp
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Original file line number Diff line number Diff line change
@@ -1,51 +1,51 @@

struct _Bin_t {
operator uint32_t() const {return (uint32_t)(_ptr()->core.bin);}
const uint32_t& operator=(const uint32_t& val) {
_ptr()->core.bin = (uint32_t)val;
struct _RefID_t {
operator int32_t() const {return (int32_t)(_ptr()->core.tid);}
const int32_t& operator=(const int32_t& val) {
_ptr()->core.tid = (int32_t)val;
return val;
}
private:
bam1_t* _ptr() const {
return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->Bin)))->HtsObj2();
return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->RefID)))->HtsObj2();
}
} Bin;
} RefID;

struct _AlignmentFlag_t {
operator int32_t() const {return (int32_t)(_ptr()->core.flag);}
struct _Position_t {
operator int32_t() const {return (int32_t)(_ptr()->core.pos);}
const int32_t& operator=(const int32_t& val) {
_ptr()->core.flag = (int32_t)val;
_ptr()->core.pos = (int32_t)val;
return val;
}
private:
bam1_t* _ptr() const {
return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->AlignmentFlag)))->HtsObj2();
return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->Position)))->HtsObj2();
}
} AlignmentFlag;
} Position;

struct _MapQuality_t {
operator int16_t() const {return (int16_t)(_ptr()->core.qual);}
const int16_t& operator=(const int16_t& val) {
_ptr()->core.qual = (int16_t)val;
struct _MatePosition_t {
operator int32_t() const {return (int32_t)(_ptr()->core.mpos);}
const int32_t& operator=(const int32_t& val) {
_ptr()->core.mpos = (int32_t)val;
return val;
}
private:
bam1_t* _ptr() const {
return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->MapQuality)))->HtsObj2();
return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->MatePosition)))->HtsObj2();
}
} MapQuality;
} MatePosition;

struct _Length_t {
operator int32_t() const {return (int32_t)(_ptr()->core.l_qseq);}
struct _MateRefID_t {
operator int32_t() const {return (int32_t)(_ptr()->core.mtid);}
const int32_t& operator=(const int32_t& val) {
_ptr()->core.l_qseq = (int32_t)val;
_ptr()->core.mtid = (int32_t)val;
return val;
}
private:
bam1_t* _ptr() const {
return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->Length)))->HtsObj2();
return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->MateRefID)))->HtsObj2();
}
} Length;
} MateRefID;

struct _InsertSize_t {
operator int32_t() const {return (int32_t)(_ptr()->core.isize);}
Expand All @@ -59,86 +59,86 @@ struct _InsertSize_t {
}
} InsertSize;

struct _MatePosition_t {
operator int32_t() const {return (int32_t)(_ptr()->core.mpos);}
struct _Length_t {
operator int32_t() const {return (int32_t)(_ptr()->core.l_qseq);}
const int32_t& operator=(const int32_t& val) {
_ptr()->core.mpos = (int32_t)val;
_ptr()->core.l_qseq = (int32_t)val;
return val;
}
private:
bam1_t* _ptr() const {
return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->MatePosition)))->HtsObj2();
return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->Length)))->HtsObj2();
}
} MatePosition;
} Length;

struct _NumCigarOperations_t {
operator uint32_t() const {return (uint32_t)(_ptr()->core.n_cigar);}
struct _Bin_t {
operator uint32_t() const {return (uint32_t)(_ptr()->core.bin);}
const uint32_t& operator=(const uint32_t& val) {
_ptr()->core.n_cigar = (uint32_t)val;
_ptr()->core.bin = (uint32_t)val;
return val;
}
private:
bam1_t* _ptr() const {
return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->NumCigarOperations)))->HtsObj2();
return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->Bin)))->HtsObj2();
}
} NumCigarOperations;
} Bin;

struct _QuerySequenceLength_t {
operator uint32_t() const {return (uint32_t)(_ptr()->core.l_qseq);}
const uint32_t& operator=(const uint32_t& val) {
_ptr()->core.l_qseq = (uint32_t)val;
struct _MapQuality_t {
operator int16_t() const {return (int16_t)(_ptr()->core.qual);}
const int16_t& operator=(const int16_t& val) {
_ptr()->core.qual = (int16_t)val;
return val;
}
private:
bam1_t* _ptr() const {
return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->QuerySequenceLength)))->HtsObj2();
return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->MapQuality)))->HtsObj2();
}
} QuerySequenceLength;
} MapQuality;

struct _Position_t {
operator int32_t() const {return (int32_t)(_ptr()->core.pos);}
struct _AlignmentFlag_t {
operator int32_t() const {return (int32_t)(_ptr()->core.flag);}
const int32_t& operator=(const int32_t& val) {
_ptr()->core.pos = (int32_t)val;
_ptr()->core.flag = (int32_t)val;
return val;
}
private:
bam1_t* _ptr() const {
return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->Position)))->HtsObj2();
return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->AlignmentFlag)))->HtsObj2();
}
} Position;
} AlignmentFlag;

struct _QueryNameLength_t {
operator uint32_t() const {return (uint32_t)(_ptr()->core.l_qname);}
struct _NumCigarOperations_t {
operator uint32_t() const {return (uint32_t)(_ptr()->core.n_cigar);}
const uint32_t& operator=(const uint32_t& val) {
_ptr()->core.l_qname = (uint32_t)val;
_ptr()->core.n_cigar = (uint32_t)val;
return val;
}
private:
bam1_t* _ptr() const {
return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->QueryNameLength)))->HtsObj2();
return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->NumCigarOperations)))->HtsObj2();
}
} QueryNameLength;
} NumCigarOperations;

struct _MateRefID_t {
operator int32_t() const {return (int32_t)(_ptr()->core.mtid);}
const int32_t& operator=(const int32_t& val) {
_ptr()->core.mtid = (int32_t)val;
struct _QueryNameLength_t {
operator uint32_t() const {return (uint32_t)(_ptr()->core.l_qname);}
const uint32_t& operator=(const uint32_t& val) {
_ptr()->core.l_qname = (uint32_t)val;
return val;
}
private:
bam1_t* _ptr() const {
return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->MateRefID)))->HtsObj2();
return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->QueryNameLength)))->HtsObj2();
}
} MateRefID;
} QueryNameLength;

struct _RefID_t {
operator int32_t() const {return (int32_t)(_ptr()->core.tid);}
const int32_t& operator=(const int32_t& val) {
_ptr()->core.tid = (int32_t)val;
struct _QuerySequenceLength_t {
operator uint32_t() const {return (uint32_t)(_ptr()->core.l_qseq);}
const uint32_t& operator=(const uint32_t& val) {
_ptr()->core.l_qseq = (uint32_t)val;
return val;
}
private:
bam1_t* _ptr() const {
return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->RefID)))->HtsObj2();
return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->QuerySequenceLength)))->HtsObj2();
}
} RefID;
} QuerySequenceLength;

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