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A server for maintaining high-throughput sequencing QC data

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bartongroup/AlmostSignificant

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AlmostSignificant

WARNING

This distribution includes a legacy version of jquery that is known to have vulnerabilities. The original developers are not in a position to update the code to patch this so if you wish to use AlmostSignificant please apply and test the patch before running the code.

Dependency jquery

Version >= 1.2.0 < 3.5.0

Upgrade to ~> 3.5.0

Defined in jquery-1.10.1.js

Vulnerabilities

CVE-2020-11022 Moderate severity CVE-2020-11022 Moderate severity CVE-2020-11022 Moderate severity

Thank you.

Getting Started

DOWNLOAD AlmostSignificant.tar.gz to get started. Extract the files ( tar -xvf AlmostSignificant.tar.gz ). Read the INSTALL.md file.

Summary

AlmostSignificant is an open-source platform for aggregating multiple sources of quality metrics as well as meta-data associated with DNA sequencing runs from Illumina sequencing machines. AlmostSignificant is a graphical platform to streamline the quality control of DNA sequencing data, to collect and store these data for future reference and to collect extra meta-data associated with the sequencing runs to check for errors and monitor the volume of data produced by the associated machines. AlmostSignificant has been used to track the quality of over 80 sequencing runs covering over 2500 samples produced over the last three years

Requires python 2.7, the illuminate package (available via pip install illuminate), and django >1.7, python-dev and pdflatex.

For more help, suggestions or information, please email Joe Ward at j.x.ward@dundee.ac.uk.

Usage

When installed, follow the instructions for loading data from the INSTALL.md file. When done, explore what you have. The arrows to the right of rows give more information about the row. Clicking a run or project name takes you to a summary table for that run/project. There are three navigational links at the top-right of the page. These take you to their respective overview pages.