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Large-scale proteomics of COVID-19 neutrophils

Maintainer: Marek Gierlinski (M.Gierlinski@dundee.ac.uk)

Software to accompany the manuscript "Investigating the impact of dipeptidyl peptidase-1 inhibition in humans using multi-omics: results from a double-blind, randomized, placebo-controlled trial in patients with COVID-19" by Long et al. (2024), in preparation.

Usage

We suggest using RStudio. Start in the top project directory. The first step is to create environment using 'renv':

install.packages("renv")
renv::restore()

This will install all necessary packages. Run the targets pipeline.

targets::tar_make()

This will analyse data, create figures (in directory manuscript_fig) and a report (in directory doc).

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Large-scale proteomics of COVID neutrophils (Chalmers)

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