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Corrected the prefix of the query length field for the SAM format.
Added the size modifiers 'T', 'M' and 'K' for the --memory-limit/-M option.
Added the option --mutual-cover to cluster sequences by mutual coverage percentage of the cluster representative and member sequence.
Added the option --symmetric for computing greedy vertex cover with symmetric edges.
Fixed an issue that caused the --approx-id option and the approx_pident output field not to work correctly when using the --anchored-swipe option.
Added the option --no-reassign to prevent reassignment to closest representative for the greedy vertex cover and clustering workflows.
Added the option --connected-component-depth to activate clustering of connected components at a given maximum depth for the greedy vertex cover and the clustering workflows.
Fixed a compiler error for Clang v17.
Improved search performance when searching with mutual coverage threshold by filtering for sequence length ratio.
Added the sensitivity mode --shapes-30x10 with sensitivity approximately equivalent to --mid-sensitive.
Added the options --round-coverage and --round-approx-id to set per round cutoffs for cascaded clustering.
The CMake switch -DKEEP_TARGET_ID is now obsolete and the corresponding function is always available.
Added the option --include-lineage to the taxonomic classification format to include taxonomic lineage in the output.
Added native support for the ARM NEON instruction set (contributed by @althonos).