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@bcgsc

BC Cancer Canada's Michael Smith Genome Sciences Centre

Sequencing Centre for Genomics and Bioinformatics Research

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  1. RNA-Bloom RNA-Bloom Public

    🌺 reference-free transcriptome assembly for short and long reads

    Java 94 7

  2. LongStitch LongStitch Public

    Correct and scaffold assemblies using long reads

    Makefile 45 7

  3. ntRoot ntRoot Public

    🌳 Human ancestry inference from genomic data

    Python 4

  4. btllib btllib Public

    Bioinformatics Technology Lab common code library

    C++ 22 5

  5. ntEdit ntEdit Public

    ✏️ Genome assembly polishing & SNV detection

    C++ 64 9

  6. goldrush goldrush Public

    Linear-time de novo Long Read Assembler

    C++ 34 2

Repositories

Showing 10 of 115 repositories
  • pori_ipr_api Public

    Integrated Pipeline Reports (IPR) API, the reporting API as part of the PORI platform

    bcgsc/pori_ipr_api’s past year of commit activity
    JavaScript 8 0 0 4 Updated Oct 10, 2024
  • btllib Public

    Bioinformatics Technology Lab common code library

    bcgsc/btllib’s past year of commit activity
    C++ 22 5 23 (1 issue needs help) 4 Updated Oct 9, 2024
  • NanoSim Public

    Nanopore sequence read simulator

    bcgsc/NanoSim’s past year of commit activity
    Python 233 57 28 (6 issues need help) 2 Updated Oct 9, 2024
  • pori_ipr_client Public

    Integrated Pipeline Reports (IPR) client. The web interface for the reporting application as part of PORI

    bcgsc/pori_ipr_client’s past year of commit activity
    TypeScript 8 GPL-3.0 1 0 3 Updated Oct 9, 2024
  • pori_graphkb_loader Public

    The Loaders for GraphKB. Imports content from external sources via the GraphKB REST API

    bcgsc/pori_graphkb_loader’s past year of commit activity
    JavaScript 6 GPL-3.0 4 12 3 Updated Oct 8, 2024
  • ntRoot Public

    🌳 Human ancestry inference from genomic data

    bcgsc/ntRoot’s past year of commit activity
    Python 4 GPL-3.0 0 0 0 Updated Oct 8, 2024
  • btl Public

    🔬 Bioinformatics Technology Lab, Genome Sciences Centre

    bcgsc/btl’s past year of commit activity
    HTML 1 3 4 0 Updated Oct 7, 2024
  • abyss Public

    🔬 Assemble large genomes using short reads

    bcgsc/abyss’s past year of commit activity
    C++ 310 107 4 0 Updated Oct 3, 2024
  • ntSynt Public

    Detecting multi-genome synteny using minimizer graph mapping

    bcgsc/ntSynt’s past year of commit activity
    Python 69 GPL-3.0 1 0 0 Updated Oct 3, 2024
  • goldrush Public

    Linear-time de novo Long Read Assembler

    bcgsc/goldrush’s past year of commit activity
    C++ 34 GPL-3.0 2 6 0 Updated Oct 3, 2024
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