CAncer Drug Response nEtworks (CADRE) Predicts Synergistic Drug Combinations.
For the data file used in code, there are other 2 datasets(summary_api.csv, summary_df_ALMANAC.csv) used by code are large and can be downloaded via Zenodo. https://zenodo.org/doi/10.5281/zenodo.10074105
install.packages("devtools")
library(devtools)
install_github("bebeklab/CADRE")
Download and copypaste summary_api.csv, summary_df_ALMANAC.csv to CADREmodel/data/, or your_data_folder/ and change the file path in Example.Rmd.
remove.packages("CADREmodel")
Example.Rmd