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55 Open 145 Closed
55 Open 145 Closed
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Issues list

Cleanup module configs and decide on default output files enhancement New feature or request high-priority
#434 opened Nov 5, 2024 by jpfeuffer
@ypriverol @jpfeuffer @daichengxin
ProteomicsLFQ memory consumed bug Something isn't working
#432 opened Oct 18, 2024 by daichengxin
@timosachsenberg @jpfeuffer
10
Add support or warnings (and tests) for edge cases (extension case, single files) bug Something isn't working
#431 opened Oct 18, 2024 by NikoHensley
43
Support for .dia file format in quantms pipeline enhancement New feature or request
#430 opened Oct 16, 2024 by hosseinvk
3
Add new rescoring features to our overview graphics
#428 opened Oct 14, 2024 by jpfeuffer
1
mztab export fails for particular dataset from user. bug Something isn't working
#427 opened Oct 9, 2024 by ypriverol
@daichengxin
bug in quantms related with parquet and SDRF-pipelines bug Something isn't working
#425 opened Oct 6, 2024 by ypriverol
@ypriverol
1
OpenMS and frequently mass shifts in Unimod enhancement New feature or request
#411 opened Aug 20, 2024 by ypriverol
12
Benchmarking of the id dda workflow (ms2rescore, percolator, SNR) enhancement New feature or request
#410 opened Aug 16, 2024 by ypriverol
@jpfeuffer @daichengxin
13
First Tasks for of improvements of OpenMS and quantms enhancement New feature or request research-projects
#393 opened Jul 31, 2024 by ypriverol
1 of 3 tasks
@ypriverol @timosachsenberg @MaLLLiYA
2
Comet new version has been released Comet v2024.01.0 enhancement New feature or request
#371 opened May 7, 2024 by ypriverol
3 tasks
@ypriverol @timosachsenberg @daichengxin
2
the charge min and max and missclevages are sometimes not working bug Something isn't working
#364 opened Mar 25, 2024 by ypriverol
@ypriverol @timosachsenberg
@jpfeuffer @daichengxin
3
Defining more enzymes in OpenMS Comet adaptor enhancement New feature or request
#354 opened Feb 22, 2024 by ypriverol
@ypriverol
11
Open-search with quantms, use cases and workflow documentation Improvements or additions to documentation enhancement New feature or request high-priority open-search sage-support
#345 opened Jan 18, 2024 by ypriverol
8 tasks
@daichengxin
1
Test the impact and how the parameter num_hits works documentation Improvements or additions to documentation enhancement New feature or request high-priority
#344 opened Jan 16, 2024 by ypriverol
@ypriverol @daichengxin
4
Bug with ConsensusID bug Something isn't working low-priority
#343 opened Jan 16, 2024 by ypriverol
@jpfeuffer
8
Big datasets more than 200 GB mztab size are not supported. bug Something isn't working high-priority
#342 opened Jan 16, 2024 by ypriverol
@daichengxin
We should dynamically configure some of the steps depending of the experiment size. bug Something isn't working enhancement New feature or request high-priority
#340 opened Jan 12, 2024 by ypriverol
3 tasks
@ypriverol @daichengxin
2
Support for Phosphoproteomics datasets. documentation Improvements or additions to documentation enhancement New feature or request high-priority
#334 opened Jan 9, 2024 by ypriverol
10 tasks
@ypriverol
Plasma data LFQ failing bug Something isn't working
#332 opened Dec 24, 2023 by ypriverol
@timosachsenberg @jpfeuffer
1
DIA-NN - automated handling of challenging data enhancement New feature or request
#330 opened Dec 18, 2023 by michaelsteidel86
2
SAGE error in Big dataset TMT bug Something isn't working
#329 opened Dec 9, 2023 by ypriverol
@ypriverol @timosachsenberg @daichengxin
11
SAGE failing in big database bug Something isn't working
#327 opened Nov 23, 2023 by ypriverol
@ypriverol
13
LFQ MBR FDR algorithm needed. enhancement New feature or request help wanted Extra attention is needed high-priority
#303 opened Oct 13, 2023 by ypriverol
3 tasks
@timosachsenberg
8
TMT ProteinInference bug with SAGE bug Something isn't working
#299 opened Oct 4, 2023 by ypriverol
@ypriverol @jpfeuffer @daichengxin
1
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