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feat: presets for cubi-tk sodar ingest-fastq (#232 ) #235

Merged
merged 8 commits into from
Sep 2, 2024
Merged

feat: presets for cubi-tk sodar ingest-fastq (#232 ) #235

merged 8 commits into from
Sep 2, 2024

Commits on Aug 19, 2024

  1. feat: presets for cubi-tk sodar ingest-fastq (#232 )

    @Nicolai-vKuegelgen
    Nicolai-vKuegelgen committed Aug 19, 2024
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  2. chore: pin snappy version to v0.1.1 in requirements.txt (#237) 

    (cherry picked from commit 1e3d38c)
    @tedil @Nicolai-vKuegelgen
    tedil authored and Nicolai-vKuegelgen committed Aug 19, 2024
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Commits on Aug 22, 2024

  1. Code-rebview & test for digestiflow regex

    @Nicolai-vKuegelgen
    Nicolai-vKuegelgen committed Aug 22, 2024
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  2. Code-review & test for digestiflow regex

    @Nicolai-vKuegelgen
    Nicolai-vKuegelgen committed Aug 22, 2024
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  3. lint no 2

    @Nicolai-vKuegelgen
    Nicolai-vKuegelgen committed Aug 22, 2024
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Commits on Sep 2, 2024

  1. Improve tests to cover effect of "--remote-dir-pattern"

    @Nicolai-vKuegelgen
    Nicolai-vKuegelgen committed Sep 2, 2024
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  2. Also cover check remote path for ONT test

    @Nicolai-vKuegelgen
    Nicolai-vKuegelgen committed Sep 2, 2024
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  3. linting

    @Nicolai-vKuegelgen
    Nicolai-vKuegelgen committed Sep 2, 2024
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