Add gnomAD v4 short variants #168
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name: Data Pipeline CI | |
on: | |
push: | |
branches: | |
- main | |
paths: | |
- 'data-pipeline/**' | |
pull_request: | |
paths: | |
- 'data-pipeline/**' | |
jobs: | |
checks: | |
name: Checks | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v2 | |
- name: Setup Python | |
uses: actions/setup-python@v2 | |
with: | |
python-version: 3.9 | |
- name: Use pip cache | |
uses: actions/cache@v2 | |
with: | |
path: ~/.cache/pip | |
key: pip-${{ hashFiles('**/requirements*.txt') }} | |
restore-keys: | | |
pip- | |
- name: Install dependencies | |
run: | | |
pip install wheel | |
pip install -r data-pipeline/requirements.txt | |
- name: Check formatting | |
run: black --check data-pipeline/src/data_pipeline | |
- name: Run Ruff | |
run: ruff data-pipeline/src/data_pipeline | |
- name: Run Pyright | |
run: pyright |