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Add v4 CNVs

Add v4 CNVs #176

name: Data Pipeline CI
on:
push:
branches:
- main
paths:
- 'data-pipeline/**'
pull_request:
paths:
- 'data-pipeline/**'
jobs:
checks:
name: Checks
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v2
- name: Setup Python
uses: actions/setup-python@v2
with:
python-version: 3.7
- name: Use pip cache
uses: actions/cache@v2
with:
path: ~/.cache/pip
key: pip-${{ hashFiles('**/requirements*.txt') }}
restore-keys: |
pip-
- name: Install dependencies
run: |
pip install wheel
pip install -r requirements-dev.txt
pip install hail
pip install -r data-pipeline/requirements.txt
- name: Check formatting
run: black --check data-pipeline/src/data_pipeline
- name: Run Pylint
run: pylint --disable=fixme data-pipeline/src/data_pipeline