fixup: fix misc. typos

browser/help/topics/v4-browser-hts.md

@@ -32,7 +32,7 @@ Row fields:
 - `locus`: Variant locus. Contains contig and position information.
 - `alleles`: Variant alleles.
 - `exome`: Struct containing information about variant from exome data.
-  - `colocated_variants`: Struct containing array of variants located at ths same Locus as this variant, e.g. for the variant `1-55051215-G-GA`, the variants `1-55051215-G-A` and `1-55051215-G-T` are colocated.
+  - `colocated_variants`: Struct containing array of variants located at the same Locus as this variant, e.g. for the variant `1-55051215-G-GA`, the variants `1-55051215-G-A` and `1-55051215-G-T` are colocated.
     - `all`: An array containing colocated variants that are present in the entire exome dataset.
     - `non_ukb`: An array containing colocated variants that are present in the non-UK Biobank (UKB) subset of the dataset.
   - `subsets`: A set containing the subsets this variant is seen in.
@@ -102,7 +102,7 @@ Row fields:
 - `faf95_joint`: A struct containing joint (exome + genome) FAF information (95% CI).
   - `grpmax`: Groupmax FAF value for all genetic ancestry groups across exomes + genomes.
   - `grpmax_gen_anc`: Genetic ancestry group associated with the value `grpmax` above.
-- `faf99_joint`: A struct containing joint (exome + genome) FAF (99% CI).
+- `faf99_joint`: A struct containing joint (exome + genome) FAF (99% CI). Contains same fields as `faf95_joint`.
 - `colocated_variants`: Array containing all variants (exome + genome) that are located at the same locus as this variant.
 - `coverage`: Struct containing coverage information for locus.
   - `exome`: Struct containing exome coverage information.
@@ -121,14 +121,14 @@ Row fields:
 - `transcript_consequences`: Array containing variant transcript consequence information.
   - `biotype`: Transcript biotype.
   - `consequence_terms`: Array of predicted functional consequences.
-  - `domains`: Sset containing protein domains affected by variant.
+  - `domains`: Set containing protein domains affected by variant.
   - `gene_id`: Unique ID of gene associated with transcript.
   - `hgvsc`: HGVS coding sequence notation for variant.
   - `hgvsp`: HGVS protein notation for variant.
   - `is_canonical`: Whether transcript is the canonical transcript.
   - `lof_filter`: Variant LoF filters (from [LOFTEE](https://github.com/konradjk/loftee)).
   - `lof_flags`: LOFTEE flags.
-  - `lof`: Variant LOFTEE status (high confidence [HC] or low confidence [LC]).
+  - `lof`: Variant LOFTEE status (high confidence `HC` or low confidence `LC`).
   - `major_consequence`: Primary consequence associated with transcript.
   - `transcript_id`: Unique transcript ID.
   - `transcript_version`: Transcript version.
@@ -137,7 +137,7 @@ Row fields:
   - `is_mane_select_version`: MANE Select version; has a value if this transcript is the MANE select transcript.
   - `refseq_id`: RefSeq ID associated with transcript.
 - `refseq_version`: RefSeq version.
-- `caid`: The ClinGen Allele id associated with this variant.
+- `caid`: The ClinGen Allele ID associated with this variant.
 - `vrs`: Struct containing information about this variant in accordance with the [Variant Representation (VRS)](https://vrs.ga4gh.org/en/stable/) standard.
   - `ref`: Struct containing information about the reference allele.
     - `allele_id`: The unique Allele ID.
@@ -157,7 +157,7 @@ Row fields:
 - `strand`: Gene strand.
 - `start`: Gene genomic start position (position only).
 - `stop`: Gene genomic stop position (position only).
-- `xstart`: Gene genomic start position (format: chromosomeposition). xpos can be calculated with ((chrom \* 10<sup>9</sup>) + pos), note that chrX is encoded as 23, chrY as 24, and chrM as 25. e.g. `1-55051215` becomes `1055051215`, and `X:9786429` becomes `23009786429`.
+- `xstart`: Gene genomic start position (format: chromosomeposition). xstart can be calculated with ((chrom \* 10<sup>9</sup>) + pos), note that chrX is encoded as 23, chrY as 24, and chrM as 25. e.g. `1-55051215` becomes `1055051215`, and `X:9786429` becomes `23009786429`.
 - `xstop`: Gene genomic stop position (format: chromosomeposition).
 - `exons`: Array containing exon information for gene.
   - `feature_type`: Exon type (e.g., CDS).
@@ -184,9 +184,9 @@ Row fields:
   - `xstart`: Exon genomic start position (format: chromsomeposition).
   - `xstop`: Exon genomic start position (format: chromsomeposition).
   - `reference_genome`: Reference genome associated with this transcript.
-  - `refseq_id`: Transcript RefSeq identifier.
+  - `refseq_id`: Transcript RefSeq ID.
   - `refseq_version`: RefSeq version.
-- `hgnc_id`: HGNC gene identifier.
+- `hgnc_id`: HGNC gene ID.
 - `symbol`: Gene symbol.
 - `name`: Gene name.
 - `previous_symbols`: Set containing previous gene symbols.