Add output validation/schemas for step 2

broadinstitute · Sep 19, 2023 · ec2db60 · ec2db60
1 parent b778919
commit ec2db60
Show file tree

Hide file tree

Showing 9 changed files with 808 additions and 29 deletions.
diff --git a/.../annotate_gnomad_v4_exome_variants/exome_coverage_path/gnomad_v4_exome_coverage.ht.schema b/.../annotate_gnomad_v4_exome_variants/exome_coverage_path/gnomad_v4_exome_coverage.ht.schema
@@ -0,0 +1,21 @@
+----------------------------------------
+Global fields:
+    None
+----------------------------------------
+Row fields:
+    'locus': locus<GRCh38> 
+    'xpos': int64 
+    'mean': float64 
+    'median': int32 
+    'over_1': float32 
+    'over_5': float32 
+    'over_10': float32 
+    'over_15': float32 
+    'over_20': float32 
+    'over_25': float32 
+    'over_30': float32 
+    'over_50': float32 
+    'over_100': float32 
+----------------------------------------
+Key: ['locus']
+----------------------------------------
diff --git a/...nnotate_gnomad_v4_exome_variants/genome_coverage_path/gnomad_v4_genome_coverage.ht.schema b/...nnotate_gnomad_v4_exome_variants/genome_coverage_path/gnomad_v4_genome_coverage.ht.schema
@@ -0,0 +1,21 @@
+----------------------------------------
+Global fields:
+    None
+----------------------------------------
+Row fields:
+    'locus': locus<GRCh38> 
+    'xpos': int64 
+    'mean': float64 
+    'median': int32 
+    'over_1': float32 
+    'over_5': float32 
+    'over_10': float32 
+    'over_15': float32 
+    'over_20': float32 
+    'over_25': float32 
+    'over_30': float32 
+    'over_50': float32 
+    'over_100': float32 
+----------------------------------------
+Key: ['locus']
+----------------------------------------