fixup: remove remaining bits of dedicated VA query

broadinstitute · Jun 3, 2024 · f32ef00 · f32ef00
1 parent 52958c8
commit f32ef00
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Showing 2 changed files with 6 additions and 29 deletions.
diff --git a/graphql-api/src/graphql/resolvers/va.ts b/graphql-api/src/graphql/resolvers/va.ts
@@ -32,34 +32,13 @@ const POPULATION_NAMES: Record<string, string> = {
   unk: 'Unknown',
 }
 
-const resolveVAQuery = async (_obj: any, _args: any, _ctx: any) => {
-  return { va: null, vrs: null }
-  /*  const vrsApiUrl = process.env['VRS_API_URL']
-  const variantId = normalizeVariantId(args.variantId)
-  const url = `${vrsApiUrl}/${variantId}`
-  const response = await fetch(url).catch((error: any) => {
-    throw error
-  })
-  const responseData = await response.json()
-  const va = responseData.map((result: any) => result['gks_va_freq'])
-  const vrs = responseData.map((result: any) => result['gks_vrs_variant'])
-  return { va, vrs }
-  */
-}
-
-const resolveTypeFromTypeField = (obj: any) => {
-  return `VA${obj.type}`
-}
-
 // "VANumber" because "Number" is taken
 type VANumber = { type: string; value: number }
 
-type Numberlike = VANumber
-
 type SequenceInterval = {
   type: string
-  start: Numberlike
-  end: Numberlike
+  start: VANumber
+  end: VANumber
 }
 
 type SequenceLocation = {
@@ -412,10 +391,6 @@ export const resolveVACohortAlleleFrequencies = async (
 }
 
 const resolvers = {
-  Query: {
-    va: resolveVAQuery,
-  },
-  VANumberlike: { __resolveType: resolveTypeFromTypeField },
   VASequenceInterval: {
     // Workaround for bug in some upstream API versions that omit this type in SequenceIntervals
     type: (obj: any) => obj.type || 'SequenceInterval',

diff --git a/graphql-api/src/graphql/types/query.graphql b/graphql-api/src/graphql/types/query.graphql
@@ -17,7 +17,10 @@ type Query {
     dataset: StructuralVariantDatasetId!
   ): StructuralVariantDetails @cost(value: 1)
   variant(variantId: String, rsid: String, dataset: DatasetId!): VariantDetails @cost(value: 1)
-  copy_number_variant(variantId: String!, dataset: CopyNumberVariantDatasetId!): CopyNumberVariantDetails @cost(value: 1)  
+  copy_number_variant(
+    variantId: String!
+    dataset: CopyNumberVariantDatasetId!
+  ): CopyNumberVariantDetails @cost(value: 1)
   gene_search(query: String!, reference_genome: ReferenceGenomeId!): [GeneSearchResult!]!
   variant_search(query: String!, dataset: DatasetId!): [VariantSearchResult!]!
 
@@ -34,6 +37,5 @@ type Query {
 
   short_tandem_repeats(dataset: DatasetId!): [ShortTandemRepeat!]! @cost(value: 10)
 
-  va(variantId: String!): VA!
   meta: BrowserMetadata!
 }