Adding delivery + new modification bp + updating database structure #212
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| --- | |
| name: Tests suite | |
| on: | |
| pull_request: | |
| types: [opened, synchronize, reopened] | |
| branches: ['main', 'dev'] | |
| push: | |
| tags: '[0-9]+.[0-9]+.[0-9]+' | |
| branches: ['main', 'dev'] | |
| env: | |
| REGISTRY_USER: c3genomics+github_pusher | |
| IMAGE_REGISTRY: quay.io | |
| REGISTRY_PASSWORD: ${{ secrets.QUAY_ROBOT_TOKEN }} | |
| IMAGE: c3genomics/project_tracking | |
| jobs: | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| python-version: ["3.11"] | |
| os: [ubuntu-latest, macos-latest] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install .[tests] flake8 | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is | |
| # 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 \ | |
| --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| run: | | |
| pytest -v | |
| build: | |
| needs: test | |
| if: startsWith(github.ref, 'refs/tags') | |
| name: Build image | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: set tag | |
| run: echo "RELEASE_VERSION=${GITHUB_REF#refs/*/}" >> $GITHUB_ENV | |
| - name: Buildah Action | |
| uses: redhat-actions/buildah-build@v2 | |
| with: | |
| image: ${{ env.IMAGE_REGISTRY }}/${{ env.IMAGE }} | |
| tags: ${{ env.RELEASE_VERSION }} | |
| containerfiles: ./Containerfile | |
| - name: Push to repo | |
| uses: redhat-actions/push-to-registry@v2 | |
| with: | |
| username: ${{ env.REGISTRY_USER }} | |
| password: ${{ env.REGISTRY_PASSWORD }} | |
| registry: ${{ env.IMAGE_REGISTRY }} | |
| image: ${{ env.IMAGE }} | |
| tags: ${{ env.RELEASE_VERSION }} | |
| - name: Print image url | |
| run: echo "Image pushed to ${{ env.IMAGE_REGISTRY }}/${{ env.IMAGE }}:${{ env.RELEASE_VERSION }}" | |