fixes #16 #5
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| name: Test build | |
| on: | |
| pull_request: | |
| branches: ["main"] | |
| push: | |
| branches: ["main"] | |
| jobs: | |
| build-q2-hello-world: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-13] | |
| steps: | |
| - name: checkout source | |
| uses: actions/checkout@v4 | |
| - name: set up python 3.11 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.11 | |
| - name: install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -q cookiecutter | |
| pip install -q flake8 | |
| - name: build plugin from default template | |
| run: | | |
| git config --global user.email "q2dev@example.com" | |
| git config --global user.name "A QIIME 2 Plugin Developer" | |
| cookiecutter . --no-input | |
| ls -al | |
| ls -al q2-hello-world/ | |
| ls -al q2-hello-world/environments/ | |
| - name: Set up Conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| # to-do: remove hard-coding of version | |
| activate-environment: q2-hello-world-qiime2-tiny-2024.5 | |
| environment-file: q2-hello-world/environments/q2-hello-world-qiime2-tiny-2024.5.yml | |
| auto-activate-base: false | |
| - name: Install plugin | |
| shell: bash -l {0} | |
| run: | | |
| cd q2-hello-world | |
| make install | |
| - name: Call --help on plugin | |
| shell: bash -l {0} | |
| run: | | |
| qiime hello-world --help | |
| - name: Test plugin | |
| shell: bash -l {0} | |
| run: | | |
| cd q2-hello-world | |
| make test | |
| - name: Lint plugin | |
| shell: bash -l {0} | |
| run: | | |
| flake8 | |
| q2lint |