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name: Test build | ||
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on: | ||
pull_request: | ||
branches: ["main"] | ||
push: | ||
branches: ["main"] | ||
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jobs: | ||
build-q2-hello-world: | ||
runs-on: ${{ matrix.os }} | ||
strategy: | ||
matrix: | ||
os: [ubuntu-latest, macos-13] | ||
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steps: | ||
- name: checkout source | ||
uses: actions/checkout@v4 | ||
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- name: set up python 3.11 | ||
uses: actions/setup-python@v4 | ||
with: | ||
python-version: 3.11 | ||
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- name: install dependencies | ||
run: | | ||
python -m pip install --upgrade pip | ||
pip install -q cookiecutter | ||
pip install -q flake8 | ||
- name: build plugin from default template | ||
run: | | ||
git config --global user.email "q2dev@example.com" | ||
git config --global user.name "A QIIME 2 Plugin Developer" | ||
cookiecutter . --no-input | ||
- name: Set up Conda | ||
uses: conda-incubator/setup-miniconda@v3 | ||
with: | ||
# to-do: remove hard-coding of version | ||
activate-environment: q2-hello-world-qiime2-tiny-2024.5 | ||
environment-file: q2-hello-world/environments/q2-hello-world-qiime2-tiny-2024.5.yml | ||
auto-activate-base: false | ||
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- name: Install plugin | ||
shell: bash -l {0} | ||
run: | | ||
cd q2-hello-world | ||
make install | ||
- name: Call --help on plugin | ||
shell: bash -l {0} | ||
run: | | ||
qiime hello-world --help | ||
- name: Test plugin | ||
shell: bash -l {0} | ||
run: | | ||
cd q2-hello-world | ||
make test | ||
- name: Lint plugin | ||
shell: bash -l {0} | ||
run: | | ||
flake8 | ||
q2lint |