Skip to content

Commit

Permalink
Update 02-workflow.md
Browse files Browse the repository at this point in the history
  • Loading branch information
ElnazAmanzadeh authored Oct 13, 2024
1 parent d9f3f52 commit 78c04bf
Showing 1 changed file with 6 additions and 5 deletions.
11 changes: 6 additions & 5 deletions _episodes/02-workflow.md
Original file line number Diff line number Diff line change
Expand Up @@ -21,13 +21,14 @@ Technically, scRNA-seq includes two parts of experimental design and data analys
As it was mentioned before, scRNA-seq is useful in case of heterogeniety of cells and developmental studies. For example,
imagine brain tissue with tens of cell types with tens of different expression profiles. For extracting transcriptome
of each cell, it is necessary to isolate each cell from the tissue properly.
# To achieve transcriptome of each cell individually, it is required to separate cells of a tissue or a sample into single cells.
For this, several methods have been developed since the introduction of scRNA-seq technique. Several steps are performed for this including:
- Single Cell Isolation: The first step which determines the quality of scRNA-seq. This step is performed to increase the number of cells which
are analyzed

> ## Note
>
> # To achieve transcriptome of each cell individually, it is required to separate cells of a tissue or a sample into single cells.
For this, several methods have been developed since the introduction of scRNA-seq technique. Several steps are performed for this including:
- Single Cell Isolation: The first step which determines the quality of scRNA-seq. This step is performed to increase the number of cells captured per experiment.
- For this
>
> A challange in experiment design of scRNA-seq is to isolate cells and prepare a comprehensive library.
{: .callout}

Several methods have been developed to overcome this challange from which STRT-seq, SMART-seq, CEL-seq, MARS-seq, Fluidigm C1, CytoSeq, Drop-seq, inDrop, 10x Genomics, SPLiT-seq, sci-RNA-seq, DronC-seq, and Seq-Well can be mentioned. The developmental process of sequencing techniques has been mentioned by [Svensson and colleagues](https://www.nature.com/articles/nprot.2017.149).
Expand Down

0 comments on commit 78c04bf

Please sign in to comment.