This is a neural network package implemented in Julia so I could better understand both the language and artificial neural networks.
| Filename | Description |
|---|---|
autoincoder.jl |
Generates a 8x3x8 autoencoder |
CANN_utils.jl |
Some neural network utility functions (read/write/encode/decode, etc..) |
CANN.jl |
The neural network implementation |
rap1_utils.jl |
Utility functions specific to RAP1 transcription factor site binding (as a test case) |
rap1-binder.jl |
The driver code specific to this RAP1 binding |
rap1-lieb-positives.txt |
Positive training examples |
rap1-lieb-test.txt |
Final holdout sequences for validation |
yeast-upstream-1k-negative.fa |
Sequences used to generate negative training examples |
README.md |
This file |