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Releases: codecreatede/go-longread-canvas

v1.0.0.0

24 Oct 12:24
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╭─gauavsablok@gauravsablok ~/Desktop/go/go-longread-canvas ‹main●›
╰─$ go run main.go -h
look for the matching patterns

Usage:
longread [flags]

Flags:
-h, --help help for longread
-L, --longread string long read file to be checked (default "path to the long read file")
-P, --pattern string pattern file (default "path to the file containing the patterns")
exit status 1

-detailed usage
╭─gauavsablok@gauravsablok ~/Desktop/go/go-longread-canvas ‹main●›
╰─$ go run main.go -L sample.fastq -P pattern.txt
The canavssed reads have been written
exit status 1
╭─gauavsablok@gauravsablok ~/Desktop/go/go-longread-canvas ‹main●›
╰─$ cat sample.fastq                                                                                                                                                1 ↵
@ERR10930361.1 magdelm64071_201030_115446/27
ATACTTTAAATTTTAGTTACTATTATTATTATTTAAAAAAAAAAAAAAAATTGAAAGTATATCCAAACTAGCACTCAATTAATGCAAACAATATTGTAACTTGGAAAAAGTTCAAAGGCATGAAAATCAAGATTTTTCATTTAATCAACCGGGTCAAGCAAAGTATGA
@ERR10930361.1 magdelm64071_201030_115446/27
ATACTTTAAATTTTAGTTACTATTATTATTATTTAAAAAAAAAAAAAAAATTGAAAGTATATCCAAACTAGCACTCAATTAATGCAAACAATATTGTAACTTGGAAAAAGTTCAAAGGCATGAAAATCAAGATTTTTCATTTAATCAACCGGGTCAAGCAAAGTATGA
╭─gauavsablok@gauravsablok ~/Desktop/go/go-longread-canvas ‹main●›
╰─$ cat canvased.fastq
@ERR10930361.1
ATACTTTAAATTTTAGTTACTATTATTATTATTTTTGAAAGTATATCCAAACTAGCACTCAATTAATGCAAACAATATTGTAACTTGGAAAAAGTTCAAAGGCATGAAAATCAAGATTTTTCATTTAATCAACCGGGTCAAGCAAAGTATGA
@ERR10930361.1
ATACTTTAAATTTTAGTTACTATTATTATTATTTTTGAAAGTATATCCAAACTAGCACTCAATTAATGCAAACAATATTGTAACTTGGAAAAAGTTCAAAGGCATGAAAATCAAGATTTTTCATTTAATCAACCGGGTCAAGCAAAGTATGA