README.txt

   ===============
    PeptideShaker
   ===============

   To start PeptideShaker simply double click the jar file.

   From the command line use 'java -jar PeptideShaker-X.Y.Z.jar'. 
   (Replace X.Y.Z with the PeptideShaker version number.)

   For help with runnng PeptideShaker please see:
   http://compomics.github.io/projects/peptide-shaker.html#troubleshooting


   ========================
    PeptideShaker Web Page
   ========================

   For updated information about PeptideShaker please visit:
   http://compomics.github.io/projects/peptide-shaker.html


   =========
    License
   =========
   
   Copyright Marc Vaudel, Harald Barsnes and Lennart Martens.


   Licensed under the Apache License, Version 2.0 (the "License");
   you may not use this file except in compliance with the License.
   You may obtain a copy of the License at

       http://www.apache.org/licenses/LICENSE-2.0


   Unless required by applicable law or agreed to in writing, software
   distributed under the License is distributed on an "AS IS" BASIS,
   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
   See the License for the specific language governing permissions and
   limitations under the License.


   Please note that some of the JAR files used by the PeptideShaker may 
   not have the same license as PeptideShaker itself. If you want to use 
   any of these in a different context, make sure to obtain the original 
   license for the JAR file in question.