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35 Open 492 Closed
35 Open 492 Closed
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Issues list

Question: help wanted
#543 opened Nov 6, 2024 by JAEYOONSUNG
@hbarsnes
1
Spectrum not found when parsing sage results help wanted
#542 opened Oct 29, 2024 by samgregoire
@hbarsnes
2
Peptideshaker found spectrum match null help wanted
#539 opened Sep 13, 2024 by giovanni-cro
@hbarsnes
2
java.lang.StringIndexOutOfBoundsException bug
#537 opened Jul 17, 2024 by jcanderan
@hbarsnes
2
MSFragger search result visualization help wanted
#535 opened Mar 9, 2024 by Baopusr
@hbarsnes
6
Error in PTM mapping bug
#526 opened Sep 30, 2023 by elrubio
@mvaudel
1
PeptideShaker importing error from SearchGUI output bug
#512 opened Apr 20, 2023 by fengx90
@hbarsnes
3
"spectrumMatch" is null error when trying to view identifications from searchGUI files help wanted
#509 opened Apr 5, 2023 by mlmarshall
@hbarsnes
1
Peptide-shaker doesn't progress from "Importing PSMs from mgf.comet.pep.xml.gz" help wanted
#496 opened Nov 15, 2022 by MigRibe
@hbarsnes
27
Peptideshaker run issues bug
#495 opened Nov 2, 2022 by carolinelennartsson
@hbarsnes
3
Parsing mzIdentML is whitespace sensitive enhancement
#493 opened Oct 30, 2022 by lazear
@hbarsnes
3
Export MGF with annotated fragment ions? enhancement
#482 opened Apr 4, 2022 by denisbeslic
@hbarsnes
1
SearchGUI is successful but PeptideShaker is failing bug
#481 opened Apr 1, 2022 by Bin-cc
@hbarsnes
2
PeptideShaker error when loading SearchGui output help wanted
#479 opened Feb 9, 2022 by kromer-m
@hbarsnes
10
ClassCastException Error help wanted
#477 opened Dec 18, 2021 by umutcakir
@hbarsnes
3
Error in follow-up analysis export help wanted
#472 opened Nov 16, 2021 by indianAppl
@hbarsnes
10
Hi, recently i encountered an error while using SearchGui for MS/MS analysis help wanted
#470 opened Oct 21, 2021 by niks2021
@hbarsnes
21
Allow different validation methods when creating projects enhancement
#465 opened Jun 25, 2021 by umutcakir
@mvaudel
1
Fewer identifications in newer versions bug
#455 opened May 3, 2021 by iquasere
@hbarsnes
paths.txt is always written where .jar is located no matter temp settings bug
#445 opened Mar 16, 2021 by CarlosHorro
@CarlosHorro
2
Reports: adding multiple proteins to comma separated file enhancement
#440 opened Jan 31, 2021 by tivdnbos
@hbarsnes
3
Java error in version 2.0.0 help wanted
#428 opened Nov 9, 2020 by chrishuges
@hbarsnes
25
Protein Inference problem in SC quantitation Documentation Needed Documentation is lacking or insufficient.
#372 opened Sep 5, 2019 by knrhus
@mvaudel
3
How to incorporate/merge peptide-shaker outputs of peptides and proteins enhancement help wanted
#361 opened Jun 5, 2019 by qinglong89
@hbarsnes
1
Implementing an occam's razor in the Protein(s) field of the Default PSM Report enhancement
#316 opened Jun 11, 2018 by antortjim
@hbarsnes
8
ProTip! Exclude everything labeled bug with -label:bug.