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Install micromamba to /opt/conda/condabin #288

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merged 6 commits into from
Oct 17, 2024
Merged

Install micromamba to /opt/conda/condabin #288

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146f732
place micromamba in condabin/
jaimergp Oct 17, 2024
9d8f3c0
it's sha256sum
jaimergp Oct 17, 2024
d00e00d
record chosen python version
jaimergp Oct 17, 2024
c3c26a6
test micromamba
jaimergp Oct 17, 2024
90cca96
make it executable
jaimergp Oct 17, 2024
865db56
symlink to bin/ too
jaimergp Oct 17, 2024
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11 changes: 9 additions & 2 deletions .circleci/test_docker_container.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -11,15 +11,22 @@ locale -a | grep -i 'en_US.UTF.\?8'
# check that /opt/conda has correct permissions
touch /opt/conda/bin/test_conda_forge

# check that conda is activated
# check that conda and micromamba are activated
conda info
micromamba info --root-prefix /opt/conda

# show all packages installed in base
conda list

# check that we can install a conda package
# check that we can install a conda package with conda
conda install --yes --quiet conda-forge-pinning -c conda-forge

# check that we can install a conda package with micromamba
MAMBA_PKGS_DIRS=/opt/conda/pkgs micromamba install \
--root-prefix ~/.conda --prefix=/opt/conda \
--yes --quiet --override-channels -c conda-forge \
conda-forge-ci-setup

set +e
/usr/bin/sudo -n yum install mesa-libGL mesa-dri-drivers libselinux libXdamage libXxf86vm libXext

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17 changes: 16 additions & 1 deletion scripts/run_commands
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Expand Up @@ -6,17 +6,26 @@ export additional_channel=""

export miniforge_arch="$(uname -m)"
export miniforge_version="24.7.1-2"
export micromamba_version="1.5.10-0"
export python_version="3.12" # should match the one provided in miniforge
export condapkg="https://github.com/conda-forge/miniforge/releases/download/${miniforge_version}/Miniforge3-${miniforge_version}-Linux-${miniforge_arch}.sh"
echo "$python_version" > /opt/python_version
if [ "$(uname -m)" = "x86_64" ]; then
export conda_chksum="636f7faca2d51ee42b4640ce160c751a46d57621ef4bf14378704c87c5db4fe3"
export micromamba_arch="64"
export micromamba_chksum="80057e007579d482a39dc283dd3e725503e34da7e7c51844957164511cdb917b"
elif [ "$(uname -m)" = "ppc64le" ]; then
export conda_chksum="bb5d14dac73b85da8fbe386cdd3c94022a468563a0c55e6b20a58d82b55a9737"
export micromamba_arch="ppc64le"
export micromamba_chksum="5528e92b12f7389a8d23a409a476e871f4f889a17e381924cf74459f14627ddd"
elif [ "$(uname -m)" = "aarch64" ]; then
export conda_chksum="7bf60bce50f57af7ea4500b45eeb401d9350011ab34c9c45f736647d8dba9021"
export micromamba_arch="aarch64"
export micromamba_chksum="7803a2aa51a5f0a58f3d2ef0f07724edb67f31f61b3e44ae9b8d6c9f009f7996"
else
exit 1
fi
export condapkg="https://github.com/conda-forge/miniforge/releases/download/${miniforge_version}/Miniforge3-${miniforge_version}-Linux-${miniforge_arch}.sh"
export micromambapkg="https://github.com/mamba-org/micromamba-releases/releases/download/${micromamba_version}/micromamba-linux-${micromamba_arch}"

# give sudo permission for conda user to run yum (user creation is postponed
# to the entrypoint, so we can create a user with the same id as the host)
Expand All @@ -33,6 +42,12 @@ sha256sum miniconda.sh | grep $conda_chksum
bash miniconda.sh -b -p /opt/conda
rm -f miniconda.sh

# Download micromamba and put it condabin
curl -s -L $micromambapkg > /opt/conda/condabin/micromamba
sha256sum /opt/conda/condabin/micromamba | grep $micromamba_chksum
chmod +x /opt/conda/condabin/micromamba
ln -s /opt/conda/condabin/micromamba /opt/conda/bin/micromamba

# Work around TLS issues while updating conda's python and retrieving channel notices
export CONDA_NUMBER_CHANNEL_NOTICES="0"
touch /opt/conda/conda-meta/pinned
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