Notes on samples

Verkko (env) updates

Last commit before updating MBG and GraphAligner to get bug fixes for last set of samples:

commit: #dbd3f7c88d9e28b052164c650e6ed56b7ba837de
  - graphaligner=1.0.17
  - mbg=1.0.15

Updated to

commit: #2fe632d38ea615fb93d1af63c462078490e285f9
  - graphaligner=1.0.18
  - mbg=1.0.16

for samples:

• YRI trio: NA19238, NA19239, NA19240
• CHS trio: HG00512, HG00513, HG00514
• HG00096
• HG00732 / PUR mother

Removed

NA19320 - cell line does not grow, insufficient ONT

Confirmed contamination

NA18939 HiFi - resequencing

Potential contamination

HG04036 HiFi - v1.4.1+dirty assembly completed NA21487 HiFi - v1.4.1+dirty assembly completed

Notes on Verkko

Production version currently is v1.4+dirty [added commits #3119b39 and #4f6a54e]

Notes on nomenclature

Trio kmer DBs

HXT - Illumina HiSeq X Ten NVS - Illumina NovaSeq (6000)