Releases: ctsit/nacculator
1.14.0
NACCulator is a Python 3-based data converter that changes REDCap .csv exported data to NACC’s fixed-width .txt format. It is configured for UDS3 forms, including FTLD and LBD (versions 3.0 and 3.1). It will perform basic data integrity checks during a run: verifying that each field is the correct type and length, verifying that there are no illegal characters in the Char fields, verifying that Num fields are within the acceptable range as defined in NACC's Data Element Dictionary for each form, and checking that no blanking rules have been violated. NACCulator outputs a .txt file that is immediately ready to submit to NACC's database.
This release adds support for connecting to multiple REDCap projects via a list of API keys in the config file. This was done to aid centers that have separate REDCap projects for their Optional Module data (such as LBD and FTLD packets). It also updates NACCulator's event detection to require the presence of both the Z1X and the A1 forms for regular UDS3 packets to distinguish UDS data from Optional Module data.
What's Changed
- Bump report_handler dependency to 1.3.0 by @michael-bentz in #145
- Add support for reading from multiple REDCap projects by @michael-bentz in #146
- Update visit detection to rely on Z1X and presence of A1 for UDS packets by @s-emerson in #147
Full Changelog: 1.13.1...1.14.0
Contributors
Assets 2
Remove .vscode submodule
NACCulator is a Python 3-based data converter that changes REDCap .csv exported data to NACC’s fixed-width .txt format. It is configured for UDS3 forms, including FTLD and LBD (versions 3.0 and 3.1). It will perform basic data integrity checks during a run: verifying that each field is the correct type and length, verifying that there are no illegal characters in the Char fields, verifying that Num fields are within the acceptable range as defined in NACC's Data Element Dictionary for each form, and checking that no blanking rules have been violated. NACCulator outputs a .txt file that is immediately ready to submit to NACC's database.
This release removes a link to a private repo that was making NACCulator difficult to install.
What's Changed
- Remove submodule by @mbentz-uf in #144
Full Changelog: 1.13.0...1.13.1
Contributors
Assets 2
Add report_handler library to NACCulator
NACCulator is a Python 3-based data converter that changes REDCap .csv exported data to NACC’s fixed-width .txt format. It is configured for UDS3 forms, including FTLD and LBD (versions 3.0 and 3.1). It will perform basic data integrity checks during a run: verifying that each field is the correct type and length, verifying that there are no illegal characters in the Char fields, verifying that Num fields are within the acceptable range as defined in NACC's Data Element Dictionary for each form, and checking that no blanking rules have been violated. NACCulator outputs a .txt file that is immediately ready to submit to NACC's database.
This release adds automated logging in the "logs" folder using the report_handler library.
What's Changed
- Add Python DB Logger by @rtdtwo in #136
- Minor NP and FTLD fixes by @s-emerson in #142
- Add Neuropath version 11 to "Set to zero if blank" rules by @s-emerson in #143
New Contributors
Full Changelog: 1.12.1...1.13.0
Contributors
Assets 2
1.12.1
NACCulator is a Python 3-based data converter that changes REDCap .csv exported data to NACC’s fixed-width .txt format. It is configured for UDS3 forms, including FTLD and LBD (versions 3.0 and 3.1). It will perform basic data integrity checks during a run: verifying that each field is the correct type and length, verifying that there are no illegal characters in the Char fields, verifying that Num fields are within the acceptable range as defined in NACC's Data Element Dictionary for each form, and checking that no blanking rules have been violated. NACCulator outputs a .txt file that is immediately ready to submit to NACC's database.
This release fixes some minor errors in the blanking rules for the newly released Neuropath version 11.
1.12.0
NACCulator is a Python 3-based data converter that changes REDCap .csv exported data to NACC’s fixed-width .txt format. It is configured for UDS3 forms, including FTLD and LBD (versions 3.0 and 3.1). It will perform basic data integrity checks during a run: verifying that each field is the correct type and length, verifying that there are no illegal characters in the Char fields, verifying that Num fields are within the acceptable range as defined in NACC's Data Element Dictionary for each form, and checking that no blanking rules have been violated. NACCulator outputs a .txt file that is immediately ready to submit to NACC's database.
This release adds processing for Telephone Initial Packets and Neuropath version 11 to NACCulator.
It also makes some small updates to processing: skipping Milestone forms that are marked as "Incomplete (0)" in REDCap, adding visit number to the error output, and adding "CLS" to all CLS form error printouts.
To process Neuropath version 10 data, the flag is now "-np10". The "-np" flag now processes Neuropath version 11.
1.10.0
This release introduces minor fixes to the FTLD and LBD Short Version modules.
1.8.1
1.7.1
This release updates the telephone follow-up packet (TFP) module to include all allowable values in the NACC data element dictionary (DED).
1.7.0
This release incorporates the telephone follow-up packet 3.2 module. Centers will be able to process data from forms like the T1 and C2T, along with the expanded telehealth regimen in the other forms provided by NACC due to the COVID-19 pandemic.
1.6.0
This change was implemented after getting feedback from OHSU. Some ADRCs do not have the optional forms like A2 or A3 in their REDCap project at all, since they will not be used for that center. NACCulator used to run with the requirement that all forms be present in a REDCap project, whether they were optional or not. This change is very similar to the one made previously that made the CLS, Z1, and C1 forms optional for the REDCap csv input.