Releases: danielpodlesny/samestr
Releases · danielpodlesny/samestr
v1.2024.09
Contributors
cschu
Assets 2
v1.2024.08-1p1
- Docker container is now based on a miniforge image
- no functional changes
v1.2024.08-1
- Minor bugfixes
- example data added
- conda defaults channel removed
v1.2024.02-1
Minor Updates:
- fixed some bugs introduced in 2024.1
- Databases generated and uploaded to Zenodo
v1.2024.01-1
Major Updates:
- Support for mOTUs markers (v2, 2.5, 3, +)
- Support for MetaPhlAn SGB-level markers (mpa_vJun23_CHOCOPhlAnSGB_202307, mpa_vOct22_CHOCOPhlAnSGB_202212, mpa_vJun23_CHOCOPhlAnSGB_202307, +)
- Database has improved footprint, structure, integrity check
Minor Updates:
- Rewrite to support custom databases in the future
- Changes in command options
v1.2023.04-1
Performance
- Reverted the switch to pysam during bam-to-pileup conversion, as it was fine with smaller test datasets but significantly slower and RAM hungrier than the cli samtools install. Improved performance of conversion step.
v1.2023.03-3
Features
- Support for pypi installation
- [pending] preparation for bioconda installation
Bugfixes
- Bugfixes of Python 3.9 rewrite
- Fixed tmp dir specification
Other
- Output structure of
samestr convertnow follows the style of the other commands
v1.2023.02-1
Features
- This is a rewrite of SameStr in Python 3.9
- Native support for MetaPhlAn v3 and v4 objects and profile formats, addresses #5
v1.2022.12-1
Features
- Workaround for compatibility with MetaPhlAn v3 and v4
Bugfixes
- Fixed min. coverage calculation (now greater or equal, not greater)
- Clarified documentation of MetaPhlAn v3/v4 compatibility workaround
Other
- Updated citation
v1.2022.05-1
Features
- Flexible input of executables
Bugfixes
- Explicit use of python version
- Corrected documentation
- Installation with proper file permissions