Skip to content

[R] Generating Protein-Protein Interaction Networks using R and Quarto publishing system in HTML format.

Notifications You must be signed in to change notification settings

darwinsorchid/Biological-Networks

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

7 Commits
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

Generating Biological Networks

Description

A personal project exploring the world of network theory and complex systems in Biology through protein-protein interaction networks. Using the Quarto publishing system in R studio, a few network metrics were calculated and plotted to demonstrate different properties of the network. The respective report is available in HTML format, part of which was customized using a CSS file.

Report Contents

  • Introduction
  • Results
    • Graph Visualization
    • Node Degree
    • Degree Distribution
    • Community Detection [with Louvain clustering algorithm]
    • Modularity
    • Betweenness Centrality
    • Transitivity
    • The Importance of Hubs
  • Conclusion
  • References

Dependencies

This project was developed using the following software and R libraries:

  • R version 4.3.3
  • ggraph
  • tidygraph
  • ggplot2
  • igraph
  • gt

About

[R] Generating Protein-Protein Interaction Networks using R and Quarto publishing system in HTML format.

Topics

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages