feat: include n_loci in MI report & bump version to 0.3.0.rc2

davidlougheed · Jul 21, 2022 · 107a2ea · 107a2ea
1 parent e32fb38
commit 107a2ea
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diff --git a/setup.py b/setup.py
@@ -7,7 +7,7 @@
 
 setup(
     name="strkit",
-    version="0.3.0.rc1",
+    version="0.3.0.rc2",
 
     python_requires="~=3.7",
     install_requires=[

diff --git a/strkit/mi/result.py b/strkit/mi/result.py
@@ -286,6 +286,7 @@ def write_report_json(self, json_path: str, bin_width: int = 10):
             "mi": self.mi_value,
             "mi_95": self.mi_value_95_ci,
             "mi_99": self.mi_value_99_ci,
+            "n_loci": sum((len(lr) for lr in self.contig_results)),
             "non_matching": [dict(nm) for nm in self._non_matching],
             "hist": hist,
         }