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chore[call]: remove extraneous default args for SNV stuff
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davidlougheed committed Apr 13, 2023
1 parent 6c52a06 commit f97b04b
Showing 1 changed file with 6 additions and 6 deletions.
12 changes: 6 additions & 6 deletions strkit/call/caller/snvs.py
Original file line number Diff line number Diff line change
Expand Up @@ -45,10 +45,10 @@ def _get_read_snvs_meticulous_py(
ref_coord_start: int,
tr_start_pos: int,
tr_end_pos: int,
contiguous_threshold: int = 5,
max_snv_group_size: int = 5,
entropy_flank_size: int = 10,
entropy_threshold: float = 1.8,
contiguous_threshold: int,
max_snv_group_size: int,
entropy_flank_size: int,
entropy_threshold: float,
) -> dict[int, str]:
"""
Given a list of tuples of aligned (read pos, ref pos) pairs, this function finds non-reference SNVs which are
Expand Down Expand Up @@ -118,8 +118,8 @@ def _get_read_snvs_simple_py(
ref_coord_start: int,
tr_start_pos: int,
tr_end_pos: int,
entropy_flank_size: int = 10,
entropy_threshold: float = 1.8,
entropy_flank_size: int,
entropy_threshold: float,
) -> dict[int, str]:
query_sequence_len = len(query_sequence)
snvs: dict[int, str] = {}
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