Version 0.3.0-rc.2

• feat: include n_loci field in mi JSON report

Version 0.3.0-rc.1

• feat: JSON report generator for strkit mi + --no-tsv suppression flag for stdout
• feat: allow pooling reads from multiple read files for strkit call

Version 0.2.0

• feat: browser interface for exploring calls
• feat!: change read scoring method + cutoff to support ONT reads
• fix: sex chromosome parsing for re-calling
• fix: divide by 0 error with 0-length loci scoring
• fix: handle reads with None for query_sequence in caller (encountered with GRCh38 HG002 UCSC ONT data)
• docs: improved documentation
• chore: bump dependencies
• chore: flush call JSON after writing to stdout

Version 0.2.0-rc.4

fix!: change read scoring method + cutoff to support ONT reads
chore: add debug logging

Version 0.2.0-rc.3

• fix: handle reads with None for query_sequence in caller (encountered with GRCh38 HG002 UCSC ONT data)

Version 0.2.0-rc.2

• fix: missing Flask dependency in setup.py

Version 0.2.0-rc.1

• feat: browser interface for exploring calls
• fix: sex chromosome parsing for re-calling
• fix: divide by 0 error with 0-length loci scoring
• docs: improved option documentation

Version 0.1.1

• fix: issue with initializing precisions for read-level peak calling
• fix: don't try to call read-level peaks for loci with >2 alleles
• fix: missing read weight JSON output in targeted mode

Version 0.1.0

Initial release.