[pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
dertrotl · Sep 9, 2024 · d571518 · d571518
1 parent d1457d1
commit d571518
Showing 1 changed file with 2 additions and 3 deletions.
diff --git a/docs/notebooks/geneGATer_tutorial.ipynb b/docs/notebooks/geneGATer_tutorial.ipynb
@@ -59,7 +59,6 @@
     "import geneGATer as gt\n",
     "import squidpy as sq\n",
     "import numpy as np\n",
-    "import pandas as pd\n",
     "import scanpy as sc"
    ]
   },
@@ -235,7 +234,7 @@
    },
    "outputs": [],
    "source": [
-    "np.save('squid_genes.npy', result[4]) "
+    "np.save('squid_genes.npy', result[4])"
    ]
   },
   {
@@ -621,7 +620,7 @@
     "            fdr_method=None,\n",
     "                   copy=True,\n",
     "            interactions_params={\"resources\": \"CellPhoneDB\"},\n",
-    "            threshold=0.1, seed=0, n_perms=10000, n_jobs=1, use_raw=False) \n",
+    "            threshold=0.1, seed=0, n_perms=10000, n_jobs=1, use_raw=False)\n",
     "\n",
     "df = res[\"pvalues\"]\n",
     "print(\"Number of CellPhoneDB interactions:\", len(df))\n",