bug fix with invocation of MetaBAT

donovan-h-parks · Oct 23, 2022 · 659f611 · 659f611
1 parent 24dac84
commit 659f611
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diff --git a/unitem/VERSION b/unitem/VERSION
@@ -1,3 +1,6 @@
+1.2.3
+- bug fix with invocation of MetaBAT
+
 1.2.2
 - added option to specify random seed
 

diff --git a/unitem/bin.py b/unitem/bin.py
@@ -167,7 +167,7 @@ def metabat(self, bin_file_out, preset):
         self.logger.info(f"Running MetaBAT v1 with the {preset} preset.")
         bin_dir = os.path.join(self.output_dir, f'metabat_{preset}')
         bin_prefix = os.path.join(bin_dir, f'mb_{preset}')
-        cmd = 'metabat1 -t {} -s {}-m {} -i {} -a {} -o {} --{}'.format(
+        cmd = 'metabat1 -t {} -s {} -m {} -i {} -a {} -o {} --{}'.format(
             self.cpus,
             self.seed,
             self.min_contig_len,