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enriquea committed Apr 29, 2019
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[![Travis build status](https://travis-ci.org/enriquea/feseR.svg?branch=master)](https://travis-ci.org/enriquea/feseR)


# feseR: Feature Selection in R


## Introduction

We provide here a R package which combine multiple Feature Selection (FS) methods in a workflow for analizing high-dimentional omics data. The different feature selection steps can be classificated in: i) Univariate (Correlation filter and Gain Information), ii) Multivariate (Principal Component Analysis and Matrix Correlation based) and iii) Recursive Feature Elimination (wrapped up with a Machine Learning algorithm, i.e. Random Forest). The goal is to essemble the different steps in a efficient workflow to perform feature selection task in the contex of classification and regression problems.
We provide here a R package which combine multiple Feature Selection (FS) methods in a workflow for analizing high-dimentional omics data. The different feature selection steps can be classificated in: i) Univariate (Correlation filter and Gain Information), ii) Multivariate (Principal Component Analysis and Matrix Correlation based) and iii) Recursive Feature Elimination (wrapped up with a Machine Learning algorithm, e.g. Random Forest). The goal is to essemble the different steps in an efficient workflow to perform feature selection in the contex of classification and regression problems.

## How to install

Expand All @@ -16,7 +18,7 @@ The first step is to install `devtools`:

Then, we can install the package using:

install_github("drychkov/feseR")
install_github("enriquea/feseR")
library(feseR)


Expand All @@ -32,3 +34,11 @@ Enrique Audain, Yassel Ramos, Henning Hermjakob, Darren R. Flower, Yasset Perez-

If you find useful this tool in your work, you could want citing us:
Perez-Riverol Y, Kuhn M, Vizcaíno JA, Hitz M-P, Audain E (2017) Accurate and fast feature selection workflow for high-dimensional omics data. PLoS ONE 12(12): e0189875. https://doi.org/10.1371/journal.pone.0189875

## Mainteiner

Enrique Audain

Dmitry Rychkov

Yasset Perez-Riverol

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