Implement fragmentation of chainNet into lastz and minimap2 workflows

evotools · Mar 4, 2021 · c8873b7 · c8873b7
1 parent 8dc8466
commit c8873b7
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/modules/subworkflows/lastz.nf b/modules/subworkflows/lastz.nf
@@ -14,7 +14,7 @@ if (params.distance == 'near'){
 }
 
 //include {lastz_near; lastz_medium; lastz_far; lastz_custom} from "../processes/lastz"
-include {axtchain; chainMerge; chainNet; liftover; chain2maf} from "../processes/postprocess"
+include {axtchain; chainMerge; chainNet; liftover; chain2maf; netSynt; chainsubset} from "../processes/postprocess"
 
 // Create lastz alignments workflow
 workflow LASTZ {

diff --git a/modules/subworkflows/minimap2.nf b/modules/subworkflows/minimap2.nf
@@ -8,7 +8,7 @@ if (params.distance == 'near'){
 } else if (params.distance == 'custom') {
     include {minimap2_custom as minimap2} from '../processes/minimap2'
 }
-include {axtchain; chainMerge; chainNet; liftover; chain2maf} from "../processes/postprocess"
+include {axtchain; chainMerge; chainNet; liftover; chain2maf; netSynt; chainsubset} from "../processes/postprocess"
 
 // Create minimap2 alignments workflow
 workflow MINIMAP2 {