Create_ForC_simplified #228
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| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
| on: | |
| workflow_run: | |
| workflows: | |
| - QA_QC_checks | |
| types: | |
| - completed | |
| # push: | |
| # paths: | |
| # - 'data/**' | |
| # - 'scripts/Database_manipulation/Create_ForC_simplified.R' | |
| # - 'scripts/Database_manipulation/Create_ForC_simplified_metadata.R' | |
| # - 'scripts/Database_manipulation/Flag_suspected_duplicate_in_ForC_simplified.R' | |
| # pull_request: | |
| # paths: | |
| # - 'data/**' | |
| # - 'scripts/Database_manipulation/Create_ForC_simplified.R' | |
| # - 'scripts/Database_manipulation/Create_ForC_simplified_metadata.R' | |
| # - 'scripts/Database_manipulation/Flag_suspected_duplicate_in_ForC_simplified.R' | |
| name: Create_ForC_simplified | |
| jobs: | |
| Create_ForC_simplified: | |
| runs-on: windows-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v1 | |
| - name: Install dependencies | |
| run: | | |
| install.packages(c("remotes", "rcmdcheck", "lubridate")) | |
| # remotes::install_deps(dependencies = TRUE) | |
| shell: Rscript {0} | |
| # - name: Check | |
| # run: | | |
| # options(crayon.enabled = TRUE) | |
| # rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "error") | |
| # shell: Rscript {0} | |
| - name: Ignore SITES without coordinates | |
| id: Ignore_SITES_without_coordinates | |
| run: | | |
| source("scripts/Database_manipulation/Separate_out_SITES_with_missing_coordinates.R") | |
| shell: Rscript {0} | |
| - name: Create ForC simplified | |
| id: Create_ForC_simplified | |
| run: | | |
| source("scripts/Database_manipulation/Create_ForC_simplified.R") | |
| source("scripts/Database_manipulation/Create_ForC_simplified_metadata.R") | |
| source("scripts/Database_manipulation/Flag_suspected_duplicate_in_ForC_simplified.R") | |
| shell: Rscript {0} | |
| - name: Commit new files | |
| run: | | |
| git config --local user.email "actions@github.com" | |
| git config --local user.name "GitHub Actions" | |
| git pull | |
| git commit -m "Updating ForC_simplifed" ForC_simplified/ForC_simplified.csv ForC_simplified/ForC_simplified_metadata.csv | |
| git push |