Watchdog update, workshop progress, blacklisting fix, http remote pro…

…vider change, more assertions, list_commands coloring fix
friendsofstrandseq · Jan 9, 2024 · 5381a09 · 5381a09
1 parent 9b06f56
commit 5381a09
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/.github/workflows/main.yaml b/.github/workflows/main.yaml
@@ -48,11 +48,11 @@ jobs:
         with:
           directory: .
           snakefile: ./workflow/Snakefile
-          stagein: "conda config --set channel_priority flexible && mamba install -c bioconda snakemake-storage-plugin-http"
-          args: "--cores 1 --latency-wait 60 --configfile .tests/config/simple_config.yaml --software-deployment-method mamba -p --verbose --debug"
+          # stagein: "conda config --set channel_priority flexible && mamba install -c bioconda snakemake-storage-plugin-http"
+          args: "--cores 1 --software-deployment-method conda --latency-wait 60 --configfile .tests/config/simple_config.yaml --conda-frontend mamba -p --verbose --debug"
       - name: Testing report
         uses: snakemake/snakemake-github-action@v1.24.0
         with:
           directory: .
           snakefile: ./workflow/Snakefile
-          args: "--cores 1 --software-deployment-method mamba --latency-wait 60 --configfile .tests/config/simple_config.yaml --report report.zip"
+          args: "--cores 1 --software-deployment-method conda --latency-wait 60 --configfile .tests/config/simple_config.yaml --report report.zip"