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Optimal Hard Thresholding to determine encoding dimension #68

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wants to merge 22 commits into from
Closed

Optimal Hard Thresholding to determine encoding dimension #68

wants to merge 22 commits into from

Commits on Jun 12, 2024

  1. changed estimateBestQ to use OHT

    @andrearaithel
    andrearaithel committed Jun 12, 2024
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Commits on Jun 13, 2024

  1. edit estimateBestQ error messages and variable names

    @andrearaithel
    andrearaithel committed Jun 13, 2024
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  2. add unit tests for OHT

    @andrearaithel
    andrearaithel committed Jun 13, 2024
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  3. update OHT tests

    @andrearaithel
    andrearaithel committed Jun 13, 2024
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Commits on Jun 16, 2024

  1. add denoiseR package to Suggests

    @andrearaithel
    andrearaithel committed Jun 16, 2024
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Commits on Jun 17, 2024

  1. add xcolor package for vignette building

    @andrearaithel
    andrearaithel committed Jun 17, 2024
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Commits on Jun 20, 2024

  1. added my name

    @andrearaithel
    andrearaithel committed Jun 20, 2024
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  2. update vignette

    @andrearaithel
    andrearaithel committed Jun 20, 2024
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Commits on Jul 8, 2024

  1. add if statement to transpose zScores if aspect ratio larger than 1

    @andrearaithel
    andrearaithel committed Jul 8, 2024
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Commits on Jul 16, 2024

  1. replace small latent space error by warning

    @andrearaithel
    andrearaithel committed Jul 16, 2024
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  2. fix estimateBestQ test error

    @andrearaithel
    andrearaithel committed Jul 16, 2024
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Commits on Jul 21, 2024

  1. fix: use tinytex version 0.51 to avoid breaking changes from the newe… 

    …st version
    @andrearaithel
    andrearaithel authored Jul 21, 2024
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  2. try tinytex version 0.50

    @andrearaithel
    andrearaithel authored Jul 21, 2024
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  3. try to fix gha error by reverting changes to vignette

    @andrearaithel
    andrearaithel authored Jul 21, 2024
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  4. add xcolor package and define fgcolor again to fix error

    @andrearaithel
    andrearaithel authored Jul 21, 2024
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  5. add highr package

    @andrearaithel
    andrearaithel authored Jul 21, 2024
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  6. specify knitr version to fix gha error

    @andrearaithel
    andrearaithel authored Jul 21, 2024
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  7. revert changes to DESCRIPTION

    @andrearaithel
    andrearaithel authored Jul 21, 2024
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  8. revert changes to gha workflow and install specific knitr version

    @andrearaithel
    andrearaithel authored Jul 21, 2024
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Commits on Jul 22, 2024

  1. try to fix error by installing highlight package and calling it in th… 

    …e Rnw file
    @andrearaithel
    andrearaithel committed Jul 22, 2024
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  2. try highr package instead of highlight package

    @andrearaithel
    andrearaithel committed Jul 22, 2024
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  3. try to update knitr and tinytex

    @andrearaithel
    andrearaithel committed Jul 22, 2024
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