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Error with installing outrider and fraser on M1 Mac #496

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HMorsy opened this issue Nov 17, 2023 · 0 comments
Open

Error with installing outrider and fraser on M1 Mac #496

HMorsy opened this issue Nov 17, 2023 · 0 comments

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@HMorsy
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HMorsy commented Nov 17, 2023 •
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I am trying to install outrider and Fraser in Rstudio and I got an error multiple times.
My Mac chip is M1 max and the macOS is 13.3.1 (a)
I followed the following steps in Command line:

/bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/HEAD/install.sh)"
(base) hebamorsy@Hebas-MacBook-Pro ~ % (echo; echo 'eval "$(/opt/homebrew/bin/brew shellenv)"') >> /Users/{user}/.zprofile
zsh: no such file or directory: /Users/{user}/.zprofile
(base) hebamorsy@Hebas-MacBook-Pro ~ % eval "$(/opt/homebrew/bin/brew shellenv)"
(base) hebamorsy@Hebas-MacBook-Pro ~ % brew --prefix gcc
/opt/homebrew/opt/gcc
(base) hebamorsy@Hebas-MacBook-Pro ~ % echo; echo 'eval "$(/opt/homebrew/bin/brew shellenv)"') >> /Users/hebamorsy/.zprofile 
zsh: parse error near `)'
(base) hebamorsy@Hebas-MacBook-Pro ~ % (echo; echo 'eval "$(/opt/homebrew/bin/brew shellenv)"') >> /Users/hebamorsy/.zprofile
(base) hebamorsy@Hebas-MacBook-Pro ~ % eval "$(/opt/homebrew/bin/brew shellenv)"
(base) hebamorsy@Hebas-MacBook-Pro ~ % curl -O https://mac.r-project.org/libs-arm64/gfortran-f51f1da0-darwin20.0-arm64.tar.gz
(base) hebamorsy@Hebas-MacBook-Pro ~ % locate libquadmath.0.dylib
/Applications/Chimera.app/Contents/Resources/lib/libquadmath.0.dylib
/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libquadmath.0.dylib
/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib
((base) hebamorsy@Hebas-MacBook-Pro ~ % sudo ln -s /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libquadmath.0.dylib /opt/R/arm64/gfortran/lib/libquadmath.0.dylib
Password:
(base) hebamorsy@Hebas-MacBook-Pro ~ % sudo ln -s /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib /opt/R/arm64/gfortran/lib/libquadmath.0.dylib
ln: /opt/R/arm64/gfortran/lib/libquadmath.0.dylib: File exists
(base) hebamorsy@Hebas-MacBook-Pro ~ % sudo ln -sf /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib /opt/R/arm64/gfortran/lib/libquadmath.0.dylib
Password:

Then I tried to install Outrider in R studio :

devtools::install_github('gagneurlab/OUTRIDER', ref='plot_function_update')
Downloading GitHub repo gagneurlab/OUTRIDER@plot_function_update
These packages have more recent versions available.
It is recommended to update all of them.
Which would you like to update?

 1: All                                                 
 2: CRAN packages only                                  
 3: None                                                
 4: colorspace   (2.0-3        -> 2.1-0       ) [CRAN]  
 5: vctrs        (0.6.3        -> 0.6.4       ) [CRAN]  
 6: stringi      (1.7.12       -> 1.8.1       ) [CRAN]  
 7: rlang        (1.1.1        -> 1.1.2       ) [CRAN]  
 8: lifecycle    (1.0.3        -> 1.0.4       ) [CRAN]  
 9: Rcpp         (1.0.8.3      -> 1.0.11      ) [CRAN]  
10: later        (1.3.0        -> 1.3.1       ) [CRAN]  
11: digest       (0.6.31       -> 0.6.33      ) [CRAN]  
12: htmltools    (0.5.5        -> 0.5.7       ) [CRAN]  
13: withr        (2.5.0        -> 2.5.2       ) [CRAN]  
14: utf8         (1.2.3        -> 1.2.4       ) [CRAN]  
15: fansi        (1.0.4        -> 1.0.5       ) [CRAN]  
16: stringr      (1.5.0        -> 1.5.1       ) [CRAN]  
17: openssl      (2.1.0        -> 2.1.1       ) [CRAN]  
18: curl         (5.0.2        -> 5.1.0       ) [CRAN]  
19: viridisLite  (0.4.0        -> 0.4.2       ) [CRAN]  
20: labeling     (0.4.2        -> 0.4.3       ) [CRAN]  
21: farver       (2.1.0        -> 2.1.1       ) [CRAN]  
22: scales       (1.2.0        -> 1.2.1       ) [CRAN]  
23: isoband      (0.2.5        -> 0.2.7       ) [CRAN]  
24: gtable       (0.3.0        -> 0.3.4       ) [CRAN]  
25: ggplot2      (3.3.6        -> 3.4.4       ) [CRAN]  
26: ps           (1.7.1        -> 1.7.5       ) [CRAN]  
27: processx     (3.6.1        -> 3.8.2       ) [CRAN]  
28: callr        (3.7.0        -> 3.7.3       ) [CRAN]  
29: fs           (1.6.2        -> 1.6.3       ) [CRAN]  
30: sass         (0.4.6        -> 0.4.7       ) [CRAN]  
31: tinytex      (0.45         -> 0.48        ) [CRAN]  
32: fontawesome  (0.5.1        -> 0.5.2       ) [CRAN]  
33: bslib        (0.4.2        -> 0.5.1       ) [CRAN]  
34: xfun         (0.39         -> 0.41        ) [CRAN]  
35: evaluate     (0.21         -> 0.23        ) [CRAN]  
36: rmarkdown    (58ca4df16... -> e62b928c5...) [GitHub]
37: knitr        (1.42         -> 1.45        ) [CRAN]  
38: vegan        (2.6-2        -> 2.6-4       ) [CRAN]  
39: TSP          (1.2-2        -> 1.2-4       ) [CRAN]  
40: plyr         (1.8.7        -> 1.8.9       ) [CRAN]  
41: viridis      (0.6.2        -> 0.6.4       ) [CRAN]  
42: promises     (1.2.0.1      -> 1.2.1       ) [CRAN]  
43: data.table   (1.14.2       -> 1.14.8      ) [CRAN]  
44: htmlwidgets  (1.5.4        -> 1.6.2       ) [CRAN]  
45: RCurl        (1.98-1.7     -> 1.98-1.13   ) [CRAN]  
46: crayon       (1.5.1        -> 1.5.2       ) [CRAN]  
47: png          (0.1-7        -> 0.1-8       ) [CRAN]  
48: RSQLite      (2.3.1        -> 2.3.3       ) [CRAN]  
49: XML          (3.99-0.10    -> 3.99-0.15   ) [CRAN]  
50: formatR      (1.12         -> 1.14        ) [CRAN]  
51: BH           (1.78.0-0     -> 1.81.0-1    ) [CRAN]  
52: matrixStats  (0.62.0       -> 1.1.0       ) [CRAN]  
53: prettyunits  (1.1.1        -> 1.2.0       ) [CRAN]  
54: hms          (1.1.1        -> 1.1.3       ) [CRAN]  
55: dbplyr       (2.3.3        -> 2.4.0       ) [CRAN]  
56: xml2         (1.3.3        -> 1.3.5       ) [CRAN]  
57: BiocFileC... (21fc57aa1... -> 7b7c4d379...) [GitHub]
58: webshot      (0.5.4        -> 0.5.5       ) [CRAN]  
59: seriation    (1.4.1        -> 1.5.1       ) [CRAN]  
60: dendextend   (1.16.0       -> 1.17.1      ) [CRAN]  
61: plotly       (4.10.1       -> 4.10.3      ) [CRAN]  
62: RcppArmad... (0.11.4.4.0   -> 0.12.6.6.0  ) [CRAN]  
63: locfit       (1.5-9.5      -> 1.5-9.8     ) [CRAN]  
64: checkmate    (2.1.0        -> 2.3.0       ) [CRAN]  
65: heatmaply    (1.4.2        -> 1.5.0       ) [CRAN]  
66: ggrepel      (0.9.3        -> 0.9.4       ) [CRAN]  

Enter one or more numbers, or an empty line to skip updates: 3
✔  checking for file ‘/private/var/folders/n4/k84zqz_n5pz4w77x039w0szm0000gn/T/Rtmp8pNU3A/remotesd827b73361c/gagneurlab-OUTRIDER-bc16e60/DESCRIPTION’ (345ms)
─  preparing ‘OUTRIDER’:
✔  checking DESCRIPTION meta-information ...
─  cleaning src
─  checking for LF line-endings in source and make files and shell scripts
─  checking for empty or unneeded directories
─  building ‘OUTRIDER_1.17.1.tar.gz’
   
* installing *source* package ‘OUTRIDER’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I/usr/local/include   -DARMA_DONT_USE_OPENMP -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include/RcppCommon.h:167:
/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
    ::sprintf(buff, "%02x", from);
      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
                                                      ^
1 warning generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I/usr/local/include   -DARMA_DONT_USE_OPENMP -fPIC  -Wall -g -O2  -c loss_n_gradient_functions.cpp -o loss_n_gradient_functions.o
In file included from loss_n_gradient_functions.cpp:4:
In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include/RcppCommon.h:167:
/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
    ::sprintf(buff, "%02x", from);
      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
                                                      ^
1 warning generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o OUTRIDER.so RcppExports.o loss_n_gradient_functions.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
ld: library not found for -lgfortran
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [OUTRIDER.so] Error 1
ERROR: compilation failed for package ‘OUTRIDER’
* removing ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library/OUTRIDER’
* restoring previous ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library/OUTRIDER’
Warning message:
In i.p(...) :
  installation of package ‘/var/folders/n4/k84zqz_n5pz4w77x039w0szm0000gn/T//Rtmp8pNU3A/filed82753ae847e/OUTRIDER_1.17.1.tar.gz’ had non-zero exit status

The same problem for Fraser

devtools::install_github('gagneurlab/FRASER', ref='1.99.0')
Downloading GitHub repo gagneurlab/FRASER@1.99.0
These packages have more recent versions available.
It is recommended to update all of them.
Which would you like to update?

 1: All                                                 
 2: CRAN packages only                                  
 3: None                                                
 4: vctrs        (0.6.3        -> 0.6.4       ) [CRAN]  
 5: utf8         (1.2.3        -> 1.2.4       ) [CRAN]  
 6: rlang        (1.1.1        -> 1.1.2       ) [CRAN]  
 7: lifecycle    (1.0.3        -> 1.0.4       ) [CRAN]  
 8: fansi        (1.0.4        -> 1.0.5       ) [CRAN]  
 9: Rcpp         (1.0.8.3      -> 1.0.11      ) [CRAN]  
10: later        (1.3.0        -> 1.3.1       ) [CRAN]  
11: digest       (0.6.31       -> 0.6.33      ) [CRAN]  
12: htmltools    (0.5.5        -> 0.5.7       ) [CRAN]  
13: withr        (2.5.0        -> 2.5.2       ) [CRAN]  
14: stringi      (1.7.12       -> 1.8.1       ) [CRAN]  
15: stringr      (1.5.0        -> 1.5.1       ) [CRAN]  
16: fs           (1.6.2        -> 1.6.3       ) [CRAN]  
17: sass         (0.4.6        -> 0.4.7       ) [CRAN]  
18: tinytex      (0.45         -> 0.48        ) [CRAN]  
19: fontawesome  (0.5.1        -> 0.5.2       ) [CRAN]  
20: bslib        (0.4.2        -> 0.5.1       ) [CRAN]  
21: xfun         (0.39         -> 0.41        ) [CRAN]  
22: evaluate     (0.21         -> 0.23        ) [CRAN]  
23: rmarkdown    (58ca4df16... -> e62b928c5...) [GitHub]
24: knitr        (1.42         -> 1.45        ) [CRAN]  
25: plyr         (1.8.7        -> 1.8.9       ) [CRAN]  
26: colorspace   (2.0-3        -> 2.1-0       ) [CRAN]  
27: labeling     (0.4.2        -> 0.4.3       ) [CRAN]  
28: farver       (2.1.0        -> 2.1.1       ) [CRAN]  
29: openssl      (2.1.0        -> 2.1.1       ) [CRAN]  
30: curl         (5.0.2        -> 5.1.0       ) [CRAN]  
31: isoband      (0.2.5        -> 0.2.7       ) [CRAN]  
32: gtable       (0.3.0        -> 0.3.4       ) [CRAN]  
33: promises     (1.2.0.1      -> 1.2.1       ) [CRAN]  
34: data.table   (1.14.2       -> 1.14.8      ) [CRAN]  
35: htmlwidgets  (1.5.4        -> 1.6.2       ) [CRAN]  
36: viridisLite  (0.4.0        -> 0.4.2       ) [CRAN]  
37: scales       (1.2.0        -> 1.2.1       ) [CRAN]  
38: ggplot2      (3.3.6        -> 3.4.4       ) [CRAN]  
39: ps           (1.7.1        -> 1.7.5       ) [CRAN]  
40: processx     (3.6.1        -> 3.8.2       ) [CRAN]  
41: callr        (3.7.0        -> 3.7.3       ) [CRAN]  
42: vegan        (2.6-2        -> 2.6-4       ) [CRAN]  
43: TSP          (1.2-2        -> 1.2-4       ) [CRAN]  
44: webshot      (0.5.4        -> 0.5.5       ) [CRAN]  
45: seriation    (1.4.1        -> 1.5.1       ) [CRAN]  
46: dendextend   (1.16.0       -> 1.17.1      ) [CRAN]  
47: viridis      (0.6.2        -> 0.6.4       ) [CRAN]  
48: plotly       (4.10.1       -> 4.10.3      ) [CRAN]  
49: crayon       (1.5.1        -> 1.5.2       ) [CRAN]  
50: formatR      (1.12         -> 1.14        ) [CRAN]  
51: png          (0.1-7        -> 0.1-8       ) [CRAN]  
52: matrixStats  (0.62.0       -> 1.1.0       ) [CRAN]  
53: RCurl        (1.98-1.7     -> 1.98-1.13   ) [CRAN]  
54: RSQLite      (2.3.1        -> 2.3.3       ) [CRAN]  
55: XML          (3.99-0.10    -> 3.99-0.15   ) [CRAN]  
56: BH           (1.78.0-0     -> 1.81.0-1    ) [CRAN]  
57: RcppArmad... (0.11.4.4.0   -> 0.12.6.6.0  ) [CRAN]  
58: locfit       (1.5-9.5      -> 1.5-9.8     ) [CRAN]  
59: checkmate    (2.1.0        -> 2.3.0       ) [CRAN]  
60: prettyunits  (1.1.1        -> 1.2.0       ) [CRAN]  
61: hms          (1.1.1        -> 1.1.3       ) [CRAN]  
62: dbplyr       (2.3.3        -> 2.4.0       ) [CRAN]  
63: xml2         (1.3.3        -> 1.3.5       ) [CRAN]  
64: BiocFileC... (21fc57aa1... -> 7b7c4d379...) [GitHub]
65: heatmaply    (1.4.2        -> 1.5.0       ) [CRAN]  
66: VGAM         (1.1-7        -> 1.1-9       ) [CRAN]  
67: R.utils      (2.12.0       -> 2.12.2      ) [CRAN]  
68: ggrepel      (0.9.3        -> 0.9.4       ) [CRAN]  

Enter one or more numbers, or an empty line to skip updates: 3
✔  checking for file ‘/private/var/folders/n4/k84zqz_n5pz4w77x039w0szm0000gn/T/Rtmp8pNU3A/remotesd827731753ef/gagneurlab-FRASER-45ff430/DESCRIPTION’ (364ms)
─  preparing ‘FRASER’:
✔  checking DESCRIPTION meta-information ...
─  cleaning src
─  checking for LF line-endings in source and make files and shell scripts
─  checking for empty or unneeded directories
─  building ‘FRASER_1.99.0.tar.gz’
   
* installing *source* package ‘FRASER’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -DARMA_DONT_USE_OPENMP -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include/RcppCommon.h:167:
/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
    ::sprintf(buff, "%02x", from);
      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
                                                      ^
1 warning generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -DARMA_DONT_USE_OPENMP -fPIC  -Wall -g -O2  -c loss_n_gradient_functions.cpp -o loss_n_gradient_functions.o
In file included from loss_n_gradient_functions.cpp:4:
In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include/RcppCommon.h:167:
/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
    ::sprintf(buff, "%02x", from);
      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
                                                      ^
1 warning generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o FRASER.so RcppExports.o loss_n_gradient_functions.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
ld: library not found for -lgfortran
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [FRASER.so] Error 1
ERROR: compilation failed for package ‘FRASER’
* removing ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library/FRASER’
* restoring previous ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library/FRASER’
Warning message:
In i.p(...) :
  installation of package ‘/var/folders/n4/k84zqz_n5pz4w77x039w0szm0000gn/T//Rtmp8pNU3A/filed82787aaf1/FRASER_1.99.0.tar.gz’ had non-zero exit status
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