Updating tools/scater from version 1.22.0 to 1.30.1

galaxyproject · Oct 14, 2024 · 8d16e6d · 8d16e6d
1 parent 2b5715a
commit 8d16e6d
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Showing 4 changed files with 8 additions and 8 deletions.
diff --git a/tools/scater/macros.xml b/tools/scater/macros.xml
@@ -1,12 +1,12 @@
 <macros>
-    <token name="@TOOL_VERSION@">1.22.0</token>
+    <token name="@TOOL_VERSION@">1.30.1</token>
     <token name="@PROFILE@">20.01</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">bioconductor-scater</requirement>
-            <requirement type="package" version="1.7.1">r-optparse</requirement>
-            <requirement type="package" version="0.0.7">r-workflowscriptscommon</requirement>
-            <requirement type="package" version="1.12.0">bioconductor-loomexperiment</requirement>
+            <requirement type="package" version="1.7.5">r-optparse</requirement>
+            <requirement type="package" version="0.0.8">r-workflowscriptscommon</requirement>
+            <requirement type="package" version="1.20.0">bioconductor-loomexperiment</requirement>
             <yield />
         </requirements>
     </xml>

diff --git a/tools/scater/scater-filter.xml b/tools/scater/scater-filter.xml
@@ -5,7 +5,7 @@
         <import>macros.xml</import>
     </macros>
     <expand macro="requirements">
-        <requirement type="package" version="0.93_9">r-robustbase</requirement>
+        <requirement type="package" version="0.99_4">r-robustbase</requirement>
     </expand>
     <command detect_errors="exit_code"><![CDATA[
 #if $filter_type.filter_type_selector == 'manual':

diff --git a/tools/scater/scater-plot-dist-scatter.xml b/tools/scater/scater-plot-dist-scatter.xml
@@ -5,8 +5,8 @@
         <import>macros.xml</import>
     </macros>
     <expand macro="requirements">
-        <requirement type="package" version="0.4.0">r-ggpubr</requirement>
-        <requirement type="package" version="1.1.1">r-scales</requirement>
+        <requirement type="package" version="0.6.0">r-ggpubr</requirement>
+        <requirement type="package" version="1.3.0">r-scales</requirement>
     </expand>
     <command detect_errors="exit_code"><![CDATA[
 Rscript '$__tool_directory__/scater-plot-dist-scatter.R'

diff --git a/tools/scater/scater-plot-tsne.xml b/tools/scater/scater-plot-tsne.xml
@@ -5,7 +5,7 @@
         <import>macros.xml</import>
     </macros>
     <expand macro="requirements">
-        <requirement type="package" version="0.15">r-rtsne</requirement>
+        <requirement type="package" version="0.17">r-rtsne</requirement>
     </expand>
     <command detect_errors="exit_code"><![CDATA[
 Rscript '$__tool_directory__/scater-plot-tsne.R'