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Added Cami Opal - A tool for evaluating taxonomic metagenome profilers #6096

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Added Cami Opal - A tool for evaluating taxonomic metagenome profilers #6096

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Commits on Jun 14, 2024

  1. Added the profile2cami tool, a component of the TaxonKit suite.

    @ber58
    ber58 committed Jun 14, 2024
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  2. Renamed shed.yml -> .shed.yml

    @ber58
    ber58 committed Jun 14, 2024
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Commits on Jun 17, 2024

  1. Shrinked delnodes.dmp 684kb -> 150kb

    @ber58
    ber58 committed Jun 17, 2024
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  2. Renamed test.loc -> ncbi_taxonomy.loc

    @ber58
    ber58 committed Jun 17, 2024
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Commits on Jun 19, 2024

  1. Added the cami OPAl tool.

    @ber58
    ber58 committed Jun 19, 2024
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  2. Removed large files from test-data

    @ber58
    ber58 committed Jun 19, 2024
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  3. Cleaned up test-data, modified test in cami_opal.xml.

    @ber58
    ber58 committed Jun 19, 2024
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  4. renamed shed.yml -> .shed.yml

    @ber58
    ber58 committed Jun 19, 2024
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  5. fixed linting errors

    @ber58
    ber58 committed Jun 19, 2024
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Commits on Jun 24, 2024

  1. Merge branch 'galaxyproject:main' into feature-cami_opal

    @ber58
    ber58 authored Jun 24, 2024
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  2. Adjusted, issues from PR for opal

    @ber58
    ber58 committed Jun 24, 2024
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  3. Removed taxonkit, from the cami-opal PR

    @ber58
    ber58 committed Jun 24, 2024
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  4. Exchanged .shed.yml with the right one

    @ber58
    ber58 committed Jun 24, 2024
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  5. Fixed the tests, worked on issues, cleaned up the code

    @ber58
    ber58 committed Jun 24, 2024
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  6. Some cleaning up...

    @ber58
    ber58 committed Jun 24, 2024
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Commits on Jul 3, 2024

  1. Merge branch 'galaxyproject:main' into feature-cami_opal

    @ber58
    ber58 authored Jul 3, 2024
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  2. Worked on issues regarding opal.xml

    @ber58
    ber58 committed Jul 3, 2024
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Commits on Jul 9, 2024

  1. collection output

    @paulzierep
    paulzierep committed Jul 9, 2024
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  2. Merge pull request #2 from paulzierep/feature-cami_opal 

    collection output
    @ber58
    ber58 authored Jul 9, 2024
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  3. Removed gzip option, renamed campi-opal to cami_opal to match cami_amber

    @ber58
    ber58 committed Jul 9, 2024
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Commits on Jul 10, 2024

  1. Worked on implementing collection output, integrated new tests, label… 

    …ing data is enhanced
    @ber58
    ber58 committed Jul 10, 2024
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Commits on Jul 11, 2024

  1. Removed unnecessary files from cami_opal

    @ber58
    ber58 committed Jul 11, 2024
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Commits on Jul 30, 2024

  1. Adjusted shed.yml

    @ber58
    ber58 committed Jul 30, 2024
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  2. Adjusted the help label, mentioned profile2cami to make it easier for… 

    … the user.
    @ber58
    ber58 committed Jul 30, 2024
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  3. Worked on Opal issues

    @ber58
    ber58 committed Jul 30, 2024
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Commits on Aug 5, 2024

  1. Created a test to check normalization, adjusted the filter option

    @ber58
    ber58 committed Aug 5, 2024
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  2. Reset Version to 1.0.12

    @ber58
    ber58 committed Aug 5, 2024
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Commits on Aug 13, 2024

  1. Merge branch 'galaxyproject:main' into feature-cami_opal

    @ber58
    ber58 authored Aug 13, 2024
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Commits on Aug 15, 2024

  1. Added biotools, removed extra info from help section

    @ber58
    ber58 committed Aug 15, 2024
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  2. Added right biotools ref

    @ber58
    ber58 committed Aug 15, 2024
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Commits on Oct 19, 2024

  1. Changed Discription

    @ber58
    ber58 committed Oct 19, 2024
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Commits on Oct 20, 2024

  1. Fixed issues mentioned by bgruening

    @ber58
    ber58 committed Oct 20, 2024
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